Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02949 ATGACGTGGATGAAGGTAAAAGGAATTGTGGCACCCCATCAAACCCATCGCTACCCCATCAAACCCTCTCTTCCAAAGCTCGCTCCTTTCTCTTCCTCTTGGAACATTTCTTGCGCTCTTCAAGCCCCCGTCGTTCTGAGCGCAGATTCCAAGCTCGTTGAGGAATTCGAAGTGGTTATTGAGGATGCCATTGATTCTGGGGTCGATGCTGAGGTTCTGGCTAAGATGCTTCTGTTGGGAATTCGAGGAAAGAAGGTTCGGACCGTGGTTCACACTCTCAACAGAGTGCAGGGTGGCGCAGTTTCTCTAGCTGCTCATCTTAATGGCTCTTCCATCGATGCCATTGCGAAGGAATGTAGCCGCTTGGTCACGTGCGACCATATTGAGGAGGCCGTTGAACTCATGGAGGTTCTCACACGTTTCAGGATACCAATCAGGGGACTTGTTCAGCCGTCTGATGTAATTAAACGCTGTGTTCTTAAGCGGAACCCAATTTTAGCTGTGAGGTATGCATGTCTTCTTCCCCATGCACAGATATTGTTCTGCAATATTATATCAGAATTTGGCAAAAGGAGGGATTTAATTTCTGCTTTGAAAGCATATGAGGTGTCGAAAAAACACGTGAATATTCCCAATATGTACATATACCGGGCAATAATTGACGCTTGTGGTCTATGTCGTGATTTCATGAAATCTAGGTACATATATGAGGATTTGCTTAATCAGAAGATCACTCCAAATATATATGTGTTCAACAGCCTCATGAATGTGAATTCCCATGATCTTAGCTACACATTAAATCTATATCAAAATATGCAGAATCTTGGTTTAAAACCAGATATGACATCTTATAACATCCTACTGAAAGCATGCTGTGTTGCTGGAAGAGTTGATCTGGCTCGAGACATTTATGGGGAACTTAAGCATTTGGAATCAGTAGGACAGCTAAAATTAGATGTCTTCACCTACAGCACAATTATAAAGGTCTTTGCAGATGTGAAATTGTGGCAGATGGCTCTACAAATCAAGCAAGACATGCTTTCTGCTGGTGTTTCTCTTAATATTGTTGCATGGTCATCATTAATCAATGCCTGTGCACATGCAGGGCTTGTAGAGCAGGCAATTCAGTTATTTGAAGAAATGCTTTTGGCTGGCAGCGAACCTAATACTCAGTGTTTCAACATCATTTTAAATGCATGTGTTGAAGCTTGCCAATATGATAGGGCTTTTCGCTTTTTCCATTCTTGGAAGGGAGAAAAGATGTTAGGGTCATTTGGTGAAGGCTGCAACAACAATATAGGGCAGGAACGTGTGCATAATGTTACTACTATGCCAACTGGCATTTCTAATTCACACATCTTGAGTTTTGCTAAGAGGTTCCCTTTCACGCCAACTACAACAACATACAATATTTTACTGAAGGCCTGTGGTACTGATTATTACCATGCAAAAGCATTAATCAAAGAGATGGAAACATTAGGTCTTTCCCCTAACCAAATTAGCTGGTCAATTTTGATAGATATATGTGGAGCATCGGCAAATGTGGAGGGTGCCATTGAGATTTTGAAAAACATGGGTGATGCTGGACTCAAACCTGATGTTATTGCATATACGATAGCCATTAAGGTTTGTGTTGAAAGTAAGAATTTTATGCAAGCATTAACATTATATGAAGAAATGAAAAGATACCAGATACGTCCGAATTTGATAACATATAACACACTTCTGAAGTCACGTAGTAAATATGGCTCCCTACATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGGGTATAGACCCAATGACTGCTATCTGGAAGAACTGATTGAGGAATGGTGTGAAGGAGTAATACTAGATAACAGAGAGAAGCAAGGAGAATTTTCTTCCAGCAATATATCTGAATTAGAGAGATCCCAAAGTTTACTTCTTGAAAAAATTGCTGCTCACCTGCTGAAGAGGGTAGCTGACATCCTAGCAATTGATGTTCAAGGTCTCACAAAGGTTGAAGCTCGTTTGGTTGTTCTTGCAGTTCTTCGGATGATCAAAGAGAATTACAATTTAGGACATTCAATAAATGATGATATCTTGATCGTCATAGGAGCTACCAAAGTAGATGAAAATCCAGCCAAACACATATTAGAAGTGCAAGAGGCAATCATAAAACTTCTTAGAAATGAGTTGGGACTGGAAGTTTTTCCTGCCAGAACCAGATTAGCACTAAGTAACACACCGAAGTTAAAGCACCCCAACCTTGCAAATCTCAACACAGAAGAACTACCAGGAGAGAATGCTTTACCCACAACGGGGTTTCAGACCAGGAGACCTGCAATTCTAATAAGGTTGAAGGTCACCAAAAAATCATTATACAGTTGGTTGCACAGGAAGTAA 2403 0.4095 MTWMKVKGIVAPHQTHRYPIKPSLPKLAPFSSSWNISCALQAPVVLSADSKLVEEFEVVIEDAIDSGVDAEVLAKMLLLGIRGKKVRTVVHTLNRVQGGAVSLAAHLNGSSIDAIAKECSRLVTCDHIEEAVELMEVLTRFRIPIRGLVQPSDVIKRCVLKRNPILAVRYACLLPHAQILFCNIISEFGKRRDLISALKAYEVSKKHVNIPNMYIYRAIIDACGLCRDFMKSRYIYEDLLNQKITPNIYVFNSLMNVNSHDLSYTLNLYQNMQNLGLKPDMTSYNILLKACCVAGRVDLARDIYGELKHLESVGQLKLDVFTYSTIIKVFADVKLWQMALQIKQDMLSAGVSLNIVAWSSLINACAHAGLVEQAIQLFEEMLLAGSEPNTQCFNIILNACVEACQYDRAFRFFHSWKGEKMLGSFGEGCNNNIGQERVHNVTTMPTGISNSHILSFAKRFPFTPTTTTYNILLKACGTDYYHAKALIKEMETLGLSPNQISWSILIDICGASANVEGAIEILKNMGDAGLKPDVIAYTIAIKVCVESKNFMQALTLYEEMKRYQIRPNLITYNTLLKSRSKYGSLHEVQQCLAIYQDMRKAGYRPNDCYLEELIEEWCEGVILDNREKQGEFSSSNISELERSQSLLLEKIAAHLLKRVADILAIDVQGLTKVEARLVVLAVLRMIKENYNLGHSINDDILIVIGATKVDENPAKHILEVQEAIIKLLRNELGLEVFPARTRLALSNTPKLKHPNLANLNTEELPGENALPTTGFQTRRPAILIRLKVTKKSLYSWLHRK 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02949 800 Pfam PPR repeat family 354 401 IPR002885 -
Spst1g02949 800 NCBIfam pentatricopeptide repeat 500 534 IPR002885 -
Spst1g02949 800 NCBIfam pentatricopeptide repeat 321 354 IPR002885 -
Spst1g02949 800 NCBIfam pentatricopeptide repeat 536 568 IPR002885 -
Spst1g02949 800 NCBIfam pentatricopeptide repeat 392 419 IPR002885 -
Spst1g02949 800 NCBIfam pentatricopeptide repeat 283 308 IPR002885 -
Spst1g02949 800 NCBIfam pentatricopeptide repeat 356 390 IPR002885 -
Spst1g02949 800 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 310 IPR002885 -
Spst1g02949 800 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Spst1g02949 800 Pfam PPR repeat 321 351 IPR002885 -
Spst1g02949 800 Gene3D Tetratricopeptide repeat domain 451 650 IPR011990 GO:0005515
Spst1g02949 800 Gene3D Tetratricopeptide repeat domain 312 445 IPR011990 GO:0005515
Spst1g02949 800 Gene3D Tetratricopeptide repeat domain 178 311 IPR011990 GO:0005515
Spst1g02949 800 Pfam Pentacotripeptide-repeat region of PRORP 188 305 IPR033443 -
Spst1g02949 800 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Spst1g02949 800 Pfam Pentatricopeptide repeat domain 521 577 IPR002885 -
Spst1g02949 800 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 605 IPR002885 -
Spst1g02949 800 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Spst1g02949 800 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Spst1g02949 800 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 462 619 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02949 173 619 Miscellaneous Gene Families AT4G11690 24.364 3.68e-28 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02949 - - gmx:100794606 1352.04