Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02910 ATGATGAACACAACGAACGGCATGATGTCACCGTCTTCTTCCTCTTCGGGAACAGCACAGTCGCCGGGGCTCAAAACCTATTTCAAAACCCCCGAGGGACGATATAAGCTTCAATACGAGAAAACTCACCCTTCTGGTCTTCTTCATTACGCCCACGGCAAAACCGTTACTCAGGTAACCCTTGCACATCTCAAGGACAAGCCTGCGCCTTCTACACCAACTGCGTCGTCTTCAAGTTTCAGTGCCAGCAGTGGGGTACGGTCTGCGGCAGCTAGATTGTTGGGAGGAAGCAACGGAAGCCGGGCACTTAGTTTTGTTGGAGGCAACGGTGGCAGCAAGAGTAATGGAGGCAACAGTAGGATTGGTTCCATTGGAGCCTCGAATACTAGTAGCTCAATGGCTAATCCAAATTTTGATGGGAAAGGGACGTACCTGATATTCAACGTCGGTGATGCAATTTTCATTAGCGATTTGAATTCTCAAGACAAGGACCCCATAAAGTCTATTCACTTCAGTAACTCGAATCCTGTTTGCCACGCGTTTGATCAAGATGCTAAGGATGGGCATGATTTGCTCATTGGATTGAACTCTGGCGATGTCTACTCAGTGTCACTGAGACAGCAATTACAGGATGTTGGTAAAAAGCTTGTTGGAGCCCAGCATTACAACAAAGATGGTTCTGTCAATAACAGTCGTTGTACATGTATCGCGTGGGTGCCTGGAGGTGAGGGTGCTTTCGTTGTTTCTCATTCTGATGGTAATTTGTACGTCTACGAGAAGAACAAAGATGGTGCTGGTGATTCTTCTTTCCCAATTATAAAAGATCAAACCCAATTTTCTGTTTCTCATGCACGTTACAATAAGAGTAATCCAATAGCTAGATGGCATATATGCCAAGGTTCAATTAACAGTATTTCTTTTTCAATGGATGGAGCATACTTGGCGACAGTGGGACGAGATGGTTATCTGCGAGTCTTCGATTATGCAAAAGAACAACTTACATGTGGTGGGAAAAGTTACTACGGTGCTTTGTTATGTTGTGCTTGGAGCATGGATGGAAAGTATATTTTGACGGGAGGGGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGTAAGATTGTGGCATGGGGTGAAGGACATAATTCATGGGTTAGTGGAGTTGCTTTCGATTCATATTGGTCATCTCCTAATTCAAATGATAATGGAGAGACGGTTATGTATCGATTTGGTTCTGTTGGTCAGGATGCACAATTGCTTTTATGGGATCTGGAAATGGACGAGATAGTAGTGCCCTTGAGGCGGCCTCCTGGTGGATCCCCAACTTATAGTACTGGAAGTCAGTCATCGCATTGGGACAATGTTGTCCCATTGGGTAACTTGCAACCTGCTCCGAGTATAAGGGATGTTCCAAAAATCTCTTCTTTGGTTGCACACAGAGTGCATACTGAACCACTTTCTGGTTTGATATTTACCCAGGAATCTGTGCTTACTGCCTGTCGGGAGGGACACATCAAAGTCTGGGTGAGGCCTGGAATTGCTTCTGAGACCCAATCAACCAATTCTGAAAATTTATTAGCTACCGGTCTCAAGGATAAATCTTCCTCACTTTCAACTAAAGTTAGTAATTCCAGTTATAAATAA 1647 0.4432 MMNTTNGMMSPSSSSSGTAQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVTQVTLAHLKDKPAPSTPTASSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGGSKSNGGNSRIGSIGASNTSSSMANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCTCIAWVPGGEGAFVVSHSDGNLYVYEKNKDGAGDSSFPIIKDQTQFSVSHARYNKSNPIARWHICQGSINSISFSMDGAYLATVGRDGYLRVFDYAKEQLTCGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKIVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETVMYRFGSVGQDAQLLLWDLEMDEIVVPLRRPPGGSPTYSTGSQSSHWDNVVPLGNLQPAPSIRDVPKISSLVAHRVHTEPLSGLIFTQESVLTACREGHIKVWVRPGIASETQSTNSENLLATGLKDKSSSLSTKVSNSSYK 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02910 548 Pfam WD domain, G-beta repeat 299 327 IPR001680 GO:0005515
Spst1g02910 548 Pfam WD domain, G-beta repeat 344 369 IPR001680 GO:0005515
Spst1g02910 548 SUPERFAMILY WD40 repeat-like 151 509 IPR036322 GO:0005515
Spst1g02910 548 PANTHER WD REPEAT PROTEIN 14 526 - -
Spst1g02910 548 MobiDBLite consensus disorder prediction 1 27 - -
Spst1g02910 548 Gene3D - 13 519 IPR015943 GO:0005515
Spst1g02910 548 SMART WD40_4 213 259 IPR001680 GO:0005515
Spst1g02910 548 SMART WD40_4 288 327 IPR001680 GO:0005515
Spst1g02910 548 SMART WD40_4 330 369 IPR001680 GO:0005515
Spst1g02910 548 SMART WD40_4 372 424 IPR001680 GO:0005515
Spst1g02910 548 SMART WD40_4 473 510 IPR001680 GO:0005515
Spst1g02910 548 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 378 IPR001680 GO:0005515
Spst1g02910 548 MobiDBLite consensus disorder prediction 1 25 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02910 304 431 Miscellaneous Gene Families AT5G08390 21.875 1.70e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02910 K24741 - gmx:100782580 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02910 1 37688485 37693131 Spst1g02910 1 37688485 37693131 ECH