Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02901 ATGGCAGGCTCTCACCTTCTTTCTCAATCTCATTCCCTTCCCAAAACCTATAACCAAAACCCTTTATCTCAAAAGCTACTTCTACCTCTCAAATTCAAAGCCACCCTCAAACCGCGTGCTCTTAGAGCGGTTCTCTCCCAGAACGCAGCTCAAACCGCGGTAGAGGACTCAAAGGTTTCTTTTAAGCACTGTTTCACTAAATCCGAAGATGGGTATCTGTACTGTGAGGGCCTCAAGGTGCATGACATCATGGAATCTGTTGAGAAAAGGCCTTTCTATCTTTACAGTAGGCCCCAGATAACTAGGAATGTTGAAGCCTATAAGGATGCATTGGAAGGGTTAAACTCTATAATTGGTTATGCCATTAAGGCCAACAATAACTTGAAGATTCTGGAACATTTGAGACACTTGGGCTGTGGAGCTGTGCTTGTTAGTGGGAATGAGCTTAGATTGGCCCTTCGTGCCGGGTTTGATCCCACAAGGTGTATCTTTAATGGGAATGGTAAAATCTTGGAGGACTTGGTCTTGGCTGCCCAGGCAGGTGTGTTTGTCAACATTGATAGTGAGTTTGACCTGGAAAACATCGTAGAGGCTGCAAAGAGGGCTGGAAAGAAGGTCAATGTTTTACTTCGGATTAATCCTGATGTAGATCCACAGGTCCATCCTTATGTTGCCACTGGAAACAAGAACTCTAAATTTGGCATTAGAAACGAGAAGCTGCAATGGTTCTTAGATGCAGTGAAGGAGCATTCTAATGAGCTCAAACTTGTAGGGGCCCACTGCCATCTTGGTTCAACAATTACCAAGGTGGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGATCAAATTCGAGCTCAGGGTTTTGAAGTTGATTATTTAAATATTGGAGGAGGACTTGGGATAGATTATTATCATTCTGGTGCTATCCTTCCTTCACCTAGAGATCTCATTGACACTGTACGGGATCTTGTTCTTTCCCGTGGTCTTAATCTCATCATTGAACCAGGGAGATCACTCATTGCCAACACATGTTGTTTAGTTAACCGGGTGACAGGTGTTAAAACTAATGGTTCTAAAAACTTCATTGTAATTGATGGAAGTATGGCAGAACTTATCCGCCCTAGTCTCTATGATGCTTACCAGCATATAGAGTTGGTTTCGCCTACCCCATCAAATGCTGAGATAGCAACCTTTGATGTGGTTGGCCCTGTCTGCGAGTCTGCAGATTTCTTAGGGAAAGGAAGAGAACTTCCTACTCCAGCCAAGGGTACTGGTTTGGTCGTTCACGATGCTGGTGCTTATTGCATGAGCATGGCATCAACATACAATCTAAAGATGCGACCTCCTGAGTATTGGGTCGAAGATGATGGATCAGTGAGCAAAATAAGGCATGGAGAGACTTTTGAAGATCACATTCGGTTTTTTGAGGGTCTTTGA 1449 0.4369 MAGSHLLSQSHSLPKTYNQNPLSQKLLLPLKFKATLKPRALRAVLSQNAAQTAVEDSKVSFKHCFTKSEDGYLYCEGLKVHDIMESVEKRPFYLYSRPQITRNVEAYKDALEGLNSIIGYAIKANNNLKILEHLRHLGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKILEDLVLAAQAGVFVNIDSEFDLENIVEAAKRAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKEHSNELKLVGAHCHLGSTITKVDIFRDAATIMINYIDQIRAQGFEVDYLNIGGGLGIDYYHSGAILPSPRDLIDTVRDLVLSRGLNLIIEPGRSLIANTCCLVNRVTGVKTNGSKNFIVIDGSMAELIRPSLYDAYQHIELVSPTPSNAEIATFDVVGPVCESADFLGKGRELPTPAKGTGLVVHDAGAYCMSMASTYNLKMRPPEYWVEDDGSVSKIRHGETFEDHIRFFEGL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02901 482 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 120 138 IPR022653 -
Spst1g02901 482 SUPERFAMILY Alanine racemase C-terminal domain-like 321 477 IPR009006 GO:0003824
Spst1g02901 482 PANTHER DIAMINOPIMELATE DECARBOXYLASE 61 479 - -
Spst1g02901 482 Gene3D Alanine racemase 97 342 IPR029066 -
Spst1g02901 482 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 346 436 IPR022643 GO:0003824
Spst1g02901 482 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 289 304 IPR022657 -
Spst1g02901 482 NCBIfam diaminopimelate decarboxylase 67 476 IPR002986 GO:0008836|GO:0009089
Spst1g02901 482 CDD PLPDE_III_DapDC 91 457 IPR002986 GO:0008836|GO:0009089
Spst1g02901 482 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 120 138 IPR000183 GO:0003824
Spst1g02901 482 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 335 354 IPR000183 GO:0003824
Spst1g02901 482 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 140 152 IPR000183 GO:0003824
Spst1g02901 482 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 253 266 IPR000183 GO:0003824
Spst1g02901 482 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 436 449 IPR000183 GO:0003824
Spst1g02901 482 SUPERFAMILY PLP-binding barrel 90 346 IPR029066 -
Spst1g02901 482 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 80 476 IPR009006 GO:0003824
Spst1g02901 482 PRINTS Diaminopimelate decarboxylase signature 446 468 IPR002986 GO:0008836|GO:0009089
Spst1g02901 482 PRINTS Diaminopimelate decarboxylase signature 363 381 IPR002986 GO:0008836|GO:0009089
Spst1g02901 482 PRINTS Diaminopimelate decarboxylase signature 138 155 IPR002986 GO:0008836|GO:0009089
Spst1g02901 482 PRINTS Diaminopimelate decarboxylase signature 226 235 IPR002986 GO:0008836|GO:0009089
Spst1g02901 482 FunFam Diaminopimelate decarboxylase 97 342 - -
Spst1g02901 482 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 99 345 IPR022644 GO:0003824
Spst1g02901 482 FunFam Diaminopimelate decarboxylase 327 476 - -
Spst1g02901 482 Hamap Diaminopimelate decarboxylase [lysA]. 77 480 IPR002986 GO:0008836|GO:0009089
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02901 Spst-Chr1 37603516 37607997 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02901 K01586 - gmx:100786832 904.82