Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02885 ATGTTCTCTTCGTCTCCATCGTTTCCTTCATCTTCTTCGCCTTCAGTTATGATGCTTCATGAACAAGCTATTCCAGCAGTTGCATCCTGGTCTTCTAGTTCTGCAGCTCGGCATTTTCCTACTTCCGTTCTTTTACAAGAACAGCGTGAGGAGTATAGGCCCCTATTGCATGTTTATAATAAGGAGGAAACATTAACTACAAGGCAGATGGATATGCTTCAAGAGAAAAATAACGCATGCAATGCTGATAAGTTTGTGCATGACTTTGTTCAGCAGTTGCATCTCCGGTCTCATTTACAGAACTTATTGACTTGTTTTCCGACAAGGGCAATTGTTGCTTCTTCAACTCTTCAACCTGTTGATAATGACTCAGAGAGGCCAGCAGATGGTCTGTTGAGGAATGCGATCTCTCTTGCTCAACCAGCTTTGTCAGCCTCAAAGCAAGCAGTTTCAATAGCTGAGGAGATGACATCAATTGAAGTTGATGATGATGATGATCCACTTTCTTTTGGTTTGGCCTCCACAAGTTTGGCTGACTCTTCACTCAAAAAGAATAAAATTGTGAGGTCGACCCGAATTATAGAAAGGCAATCTAAACAAAGAAAATCATCAAAGTCAAAAGTTCTTGATGAAGAAAGTCACCTTGAAAGAAAATCTGACGTACAGAGAAGGTTACGATTAGAAAAGAAATTAAACGAAGGGTATGATCAAAATGACCCCTTGCGTTTGTTCTTGTCGGGTCCTGAATCAAGGCAACTTTTAACCCGTGAAGAAGAGTCTCAATTGATTACTCAGCTTCAGGATTTATCAAGATTGGAAAAAGTAAAGATCAGGCTTCAATCTCAGTTGAGGCGGGAACCAACTTTAGCTGAATGGGCTGATGTCTTGGGCCTTAGTACTTGTGCCCTGCAGACGCAGCTTCATTGTGGTAACAGAAGCAAAGAAAAGCTGTTTCATGCCAATATGCGCATGGTAGTTCACATTGCTAAACATTATCAGGGACGTGGTCTCAGCCTTCAGGACTTATTTCAGGAGGGAAGTACGGGTCTTATGAAGAGCATTGGCAAGTTTAAACCTGGAGCTGGTTGCCGGTTTGGTAGTTATGCATACTGGTGGATAAGGCATTCAATAAGGAAGGCCATATTTCTACATTCCAGGACAATCCGAATGCCGGAGAATTTATATCAACTTTTGGGCAAGGTCATAGAAGCAAAGAAATCATACATTCAGGAGGGAAATATTCACCCCACCAAAGAAGAATTGGCAAGAAGGGTAGGAATTACTATAGACAAGTTGGAAACTTTACTATTTGCTTCAAGAAATCCAATTTCGATGCAGCAAACTGTGTGGGCAGACCAAGATACAACTTTCCAGGAGATTACTGCAGACTCTGCAATTGAGATCCCAGATGTGTGTGTTTCAAAACAGCTAATGAGGAGGCATATGCACAGCCTCCTAAATATGTTAAGCCCCAAAGAAAAGAGCATAATCAGGCTAAGATATGGTATTGAGGATGGCAAGGAAAAAACGTTGTCAGATATTGGCAAGGTGTTTGGTTTGACCAAGGAAAGGGTCCGGCAGTTGGAGAGCCGAGCATTGTCCAAGCTCAAGCAGTGTATTGAAAGTCAAGGGCTTGACGCATACATAGACTTGCTTATATAG 1662 0.4188 MFSSSPSFPSSSSPSVMMLHEQAIPAVASWSSSSAARHFPTSVLLQEQREEYRPLLHVYNKEETLTTRQMDMLQEKNNACNADKFVHDFVQQLHLRSHLQNLLTCFPTRAIVASSTLQPVDNDSERPADGLLRNAISLAQPALSASKQAVSIAEEMTSIEVDDDDDPLSFGLASTSLADSSLKKNKIVRSTRIIERQSKQRKSSKSKVLDEESHLERKSDVQRRLRLEKKLNEGYDQNDPLRLFLSGPESRQLLTREEESQLITQLQDLSRLEKVKIRLQSQLRREPTLAEWADVLGLSTCALQTQLHCGNRSKEKLFHANMRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKSIGKFKPGAGCRFGSYAYWWIRHSIRKAIFLHSRTIRMPENLYQLLGKVIEAKKSYIQEGNIHPTKEELARRVGITIDKLETLLFASRNPISMQQTVWADQDTTFQEITADSAIEIPDVCVSKQLMRRHMHSLLNMLSPKEKSIIRLRYGIEDGKEKTLSDIGKVFGLTKERVRQLESRALSKLKQCIESQGLDAYIDLLI 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02885 553 NCBIfam sigma-70 family RNA polymerase sigma factor 315 539 IPR014284 GO:0003700|GO:0006352|GO:0006355
Spst1g02885 553 Pfam Sigma-70, region 4 486 538 IPR007630 GO:0003700|GO:0006352|GO:0006355
Spst1g02885 553 PRINTS Major sigma-70 factor signature 525 536 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst1g02885 553 PRINTS Major sigma-70 factor signature 489 501 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst1g02885 553 PRINTS Major sigma-70 factor signature 365 373 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst1g02885 553 PRINTS Major sigma-70 factor signature 341 354 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst1g02885 553 PRINTS Major sigma-70 factor signature 510 525 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst1g02885 553 Pfam Sigma-70 region 2 317 381 IPR007627 GO:0003700|GO:0006352|GO:0006355
Spst1g02885 553 Gene3D - 234 386 - -
Spst1g02885 553 Gene3D - 390 467 IPR036388 -
Spst1g02885 553 ProSitePatterns Sigma-70 factors family signature 2. 510 536 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst1g02885 553 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 237 387 IPR013325 GO:0003700|GO:0006352|GO:0006355
Spst1g02885 553 Pfam Sigma-70 region 3 397 469 IPR007624 GO:0003700|GO:0006352|GO:0006355
Spst1g02885 553 Gene3D - 473 552 IPR036388 -
Spst1g02885 553 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 390 463 IPR013324 -
Spst1g02885 553 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 144 549 - -
Spst1g02885 553 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 450 549 IPR013324 -
Spst1g02885 553 CDD Sigma70_r4 479 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02885 Spst-Chr1 37448041 37452596 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02885 - - gmx:100815699 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02885 1 37448041 37452596 Spst1g02885 1 37448041 37452596 ECH