Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02878 ATGACAAAACCCAACGGTTACTTTTCTTTTTCCATTGCTTCCTATGGGTTCTCAAAGGGTCACATGCTTTATCCAGCCAGGGGTAAATCAGTCACTTCGCTGTCAACTCAGGGTCTGGTCAAATTTTCAAATTTCTCCACAACTACAGTTGTGCTGATTGTTTTTGGTGCGTTGCAGAAAAAAGAGAAGGCGAAGAATGAGGCTGAGAAGATGCCTGACTCGGGAGGAAAGCAAAACGACGGAATCGCCCGTGTCGTTTTGAAACTCGAAATGCATTGCGAGGGATGCGTCAAGAAGATCAAACGCGCCGTTCGCAATTTCGACGGTGTGGAAGACGTTAAGGCGGATCTATTAGGTAACAAGTTAACGGTTATTGGGAAAGTCGACCCTGCCTTAGTGCGAGATAAGCTAGCGGACAAAACTAAGAAGAAGGTCGAAATTATTTCTCCTCAACCTAAGAAAGAGTCCGCCGTCGGAGGCAAGCCACCGGAGAAGAATACGAAAGAGGAAACAACAGAGAAGAAACCGGCAGATAAGAAAACCGAAGAAAAATCTCCGAAACAGAGCACTGTGGTTTTGAAGATCCGATTACACTGTGACGGTTGCATCCAGAAAATTCGAAAGATTATGCTCAAGATCAAAGGGATTGAATCGGTTAACATAGAGGGAGGGAAGGATTTGGTGAACGTAAAGGGGACGATGGAGGAGAAGGAATTGGTAGCGTATTTGAACGAAAAGCTGAAGCGGAACGTTGAGGTGGTCCCACCTAAGAAAGAGGGCGAACAGAAAGAGGATAATAAGAAAGAGAAAGAAAAGAAGGAAGGTGATGGTGATAAGAAAGTGGGTGGTAAAAAAGAAGAGGGGGCACCGAAGGTTGAGGTTAACAAAATGGAGCACTACGGGTACGCGTATCCACCTCCTCCTATGTATTGGTACGATGGATACACACCAGGGCAAAGTAGTAGTAGTAGTAGTGGTGGTGGTTACACGGTAGAGGCTCAACCAGGGTATTCGAATCAAGGGTATGATGGTAATTACCCGAATTACCATGATCAATACCAGCATGGGTATGTGAACCAAGGGTACATGGTACAACCGCAACCACCACCCCCGTTCTACTTGAACCCTCACTATCCTCCACCGCAGATGTTCAGTGATGAGAATCCCAATGCTTGTATCGTGATGTGA 1188 0.4588 MTKPNGYFSFSIASYGFSKGHMLYPARGKSVTSLSTQGLVKFSNFSTTTVVLIVFGALQKKEKAKNEAEKMPDSGGKQNDGIARVVLKLEMHCEGCVKKIKRAVRNFDGVEDVKADLLGNKLTVIGKVDPALVRDKLADKTKKKVEIISPQPKKESAVGGKPPEKNTKEETTEKKPADKKTEEKSPKQSTVVLKIRLHCDGCIQKIRKIMLKIKGIESVNIEGGKDLVNVKGTMEEKELVAYLNEKLKRNVEVVPPKKEGEQKEDNKKEKEKKEGDGDKKVGGKKEEGAPKVEVNKMEHYGYAYPPPPMYWYDGYTPGQSSSSSSGGGYTVEAQPGYSNQGYDGNYPNYHDQYQHGYVNQGYMVQPQPPPPFYLNPHYPPPQMFSDENPNACIVM 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02878 395 SUPERFAMILY HMA, heavy metal-associated domain 189 251 IPR036163 GO:0046872
Spst1g02878 395 MobiDBLite consensus disorder prediction 158 189 - -
Spst1g02878 395 SUPERFAMILY HMA, heavy metal-associated domain 85 140 IPR036163 GO:0046872
Spst1g02878 395 Gene3D - 83 156 - -
Spst1g02878 395 Gene3D - 187 259 - -
Spst1g02878 395 MobiDBLite consensus disorder prediction 318 350 - -
Spst1g02878 395 Pfam Heavy-metal-associated domain 90 143 IPR006121 GO:0046872
Spst1g02878 395 Pfam Heavy-metal-associated domain 194 251 IPR006121 GO:0046872
Spst1g02878 395 MobiDBLite consensus disorder prediction 253 292 - -
Spst1g02878 395 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 61 395 IPR044594 GO:0046872
Spst1g02878 395 CDD HMA 91 146 IPR006121 GO:0046872
Spst1g02878 395 ProSiteProfiles Heavy-metal-associated domain profile. 188 251 IPR006121 GO:0046872
Spst1g02878 395 MobiDBLite consensus disorder prediction 143 189 - -
Spst1g02878 395 CDD HMA 197 232 IPR006121 GO:0046872
Spst1g02878 395 ProSiteProfiles Heavy-metal-associated domain profile. 82 145 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02878 Spst-Chr1 37389283 37391353 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02878 - - gmx:100792662 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02878 1 37389283 37391353 Spst1g02878 1 37389283 37391353 ECH