Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02877 ATGCCGGCAACGCCATTATCGTGTTCGTTCCTCACCTTGCAACCTCGCTTCAATTCATACGTTAAACCTATTTTCCGTTCACTCAGCTTTCAACTCCCTTCTTCCACGCTCCCATTCAATGCCAACTTTTCCAGTATCAGACTCCGCTCTTCGCTCTCGCGAGCTGCGGAGACCGATTCTCCGACCGGTGGAAGGTCCGGCGCGTTAACTCCCGGTCCCACCGTCACAGGAGATGTTCAGAAAATCGACGTGAATCCTCCCAAGGGGACGCGCGACTTCCCACCCGAGGACATGCGCTTGCGCAATTGGCTCTTCAACCATTTCAAAGAGGGTCAGGTTTCGCGGTTGTATGGATTCGAAGAGGTTGATTATCCGGTGCTTGAGTCGGAGGCATTGTTCACTAGGAAAGCGGGAGAAGAGATCAAGGACCAGGCAAAAATTTATGGTAATACAGTGAAACCAATTATTCGGTGTTTATTGTTTTTTGAATCTTTATTGTTTTTTGAGAGAATAAATGAATGGCTTTATTGTTTTGAAGATCGCGGCAATCGACGTGTTGCGTTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATACAGAAAGGGAAGTCAGTGTCACTACCAATTAAGTGGTTCACTGTTGGACAATGTTGGCGGTATGAGAGAATGACAAGGGGTCGCCGTCGTGAGCATTACCAGTGGAACATGGATATTATTGGTGTTCCTGGGGTTATGGCTGAAGCAGAGCTTATATCTTCTATTGTCACTTTGTTTAAGCGAATAGGAATTACAGAATCAGATGTTGGATTTAAGGTTTCCAGTCGAAAGCTGCCTGAACAGCTTCTGGTGATGTCAATGCCAAAAGCTTGCAGCCAACTGGCAACTGCTAACACATGTGCTCCCAAGTGCAACTTCTCTTTCGTGAGTGAGTCTTACCCATTGTCATTAGATCAGTCCACCAAGGCTCGACAACAATCAATGTTTGATAATGTTGCTCAAGTCATTGCCCTTTTCAGCATTGAGGATGTTACTACATTTATTGTTGATCACGATGATTTTCTCCATTTCAAGGTTGCCTATCAACCCACCTACCCTATTGACCCACCTAACCTATCCTTAGGAAAAAATTGGAAGACATTTGGTCATTTGGCTGGTGCAACATCAATCTTTAGTAGCATGTTTGATTCTTTGGCAATGCGAAGAGTGCAAGAACTTATCTTCTCTGGAAGAACCTTCAACACTCCCTTTGTTGTTGAAAGTTTGTGGAAAATGTCTTATATTTTGCTTGAAAGCTCCTTCTCGTTGAGACCATTTACTCTTATGCATGAAGCTTGCTTCTTTGTGGGTAAACAGAGTTTGCCTACAGCTTTAGTTCTTACATTTAACTTGATTCATATGGTTCTACAGGAAATTGAGAAAATTCCAATTGACGAGATAAAGAAAGAGTTGAAAGCTGTTGGTCTATCACAAGAGGCTGTCCAGAAGCTATTGGATGTCCTTTCTGTGAAGTCATTGACAGAGTTAGAAGAGAGACTTGGGTGCAGTGGGGAAGCAGTTGCCGATCTTAAACAGCTATTCTCTCTTGCTGAAAAAAATGGTTTCTCGAAATGGCTTCAATTTGATGCGTCAGTTGTTCGAGTTGGGCTGATTGATTCTATGACAACTGCACTGAAGGTTCATTCAGATATTCTTGGGGCTTGTGTTTGCAAAGGCTCTCCCTCAAAGATCCGGCAGGGTTTTGACCGAGAAGGAAAGCTGCGAGCTATTTGTGGTGGTGGTCGATATGATCATTTATTCTCAACTTTTGGTGCTGATGACATTGCTGCTTGTGGTTTTGGATTCGGTGATGCTGTCATAGTGGAATTATTGGGTCTTCCTACTTCAAAGTTGCTCAAAGAGAAGGGTATGTTTCCAGAGCTTAATTTGCACATAGATAACATTGTTTGCGCATTGGATGAAGATCTTCAAGGATGTGCTGCTATGGTTGCAAACATTCTCCGAGAAAAAGGGCAGAGTGTTGAGTTGGTTTTGGAAAGCAAACCACTAAAATGGGTTTTTAAACGAGCATCCCGAGTAAATGCTGAGCGGCTTGTATTAGTGGGGAATTCAGAATGGCAAAGAGGTGTGGTTGGTGTCAAAATTCTTTCTACTGCTGAACAGTACGAGGTTAAACTTGATGATTTGAAGTAA 2196 0.4344 MPATPLSCSFLTLQPRFNSYVKPIFRSLSFQLPSSTLPFNANFSSIRLRSSLSRAAETDSPTGGRSGALTPGPTVTGDVQKIDVNPPKGTRDFPPEDMRLRNWLFNHFKEGQVSRLYGFEEVDYPVLESEALFTRKAGEEIKDQAKIYGNTVKPIIRCLLFFESLLFFERINEWLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPIKWFTVGQCWRYERMTRGRRREHYQWNMDIIGVPGVMAEAELISSIVTLFKRIGITESDVGFKVSSRKLPEQLLVMSMPKACSQLATANTCAPKCNFSFVSESYPLSLDQSTKARQQSMFDNVAQVIALFSIEDVTTFIVDHDDFLHFKVAYQPTYPIDPPNLSLGKNWKTFGHLAGATSIFSSMFDSLAMRRVQELIFSGRTFNTPFVVESLWKMSYILLESSFSLRPFTLMHEACFFVGKQSLPTALVLTFNLIHMVLQEIEKIPIDEIKKELKAVGLSQEAVQKLLDVLSVKSLTELEERLGCSGEAVADLKQLFSLAEKNGFSKWLQFDASVVRVGLIDSMTTALKVHSDILGACVCKGSPSKIRQGFDREGKLRAICGGGRYDHLFSTFGADDIAACGFGFGDAVIVELLGLPTSKLLKEKGMFPELNLHIDNIVCALDEDLQGCAAMVANILREKGQSVELVLESKPLKWVFKRASRVNAERLVLVGNSEWQRGVVGVKILSTAEQYEVKLDDLK 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02877 731 Pfam Anticodon binding domain 650 730 IPR004154 -
Spst1g02877 731 Gene3D Bira Bifunctional Protein; Domain 2 458 626 IPR045864 -
Spst1g02877 731 SUPERFAMILY Class II aaRS and biotin synthetases 489 625 IPR045864 -
Spst1g02877 731 Gene3D Bira Bifunctional Protein; Domain 2 80 359 IPR045864 -
Spst1g02877 731 PANTHER HISTIDYL-TRNA SYNTHETASE 81 144 IPR004516 GO:0005737
Spst1g02877 731 Gene3D - 639 731 IPR036621 -
Spst1g02877 731 MobiDBLite consensus disorder prediction 54 94 - -
Spst1g02877 731 SUPERFAMILY Class II aaRS and biotin synthetases 86 284 IPR045864 -
Spst1g02877 731 FunFam Histidine--tRNA ligase chloroplastic/mitochondrial 639 731 - -
Spst1g02877 731 Pfam Histidyl-tRNA synthetase 176 270 IPR041715 -
Spst1g02877 731 MobiDBLite consensus disorder prediction 54 69 - -
Spst1g02877 731 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 89 640 IPR006195 -
Spst1g02877 731 CDD HisRS-like_core 97 279 IPR041715 -
Spst1g02877 731 SUPERFAMILY Class II aaRS ABD-related 646 730 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02877 K01892 - gmx:100793186 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02877 1 37355268 37371628 Spst1g02877 1 37355268 37371628 ECH