Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02849 ATGAGTTCATCCTCAGGTCAGAGCAGTGGCTATGATCTCTCTTTCAAGATCTTGTTGATCGGAGACTCTGGGGTGGGAAAAAGTAGCCTACTTGTCAGCTTCATTTCAAGTTCTGTTGAAGATCTTTCCCCCACCATTGGTGTTGATTTTAAGATCAAAACGCTCACACTAGGTGGCAAGAGAATGAAATTAACGATTTGGGATACTGCTGGGCAGGAAAGGTTCAGGACTCTAACCAGCTCTTACTATAGAAAAGCACAAGGAATCATTCTCGTTTATGATGTCACAAGGAGAGAAACCTTTACAAACTTATCAGAAGTGTGGTCTAAGGAAGTGGAACTCTACTCAACTAATCAGGATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAGATTCTGAAAGGGCTGTGAGCAGAGAAGAGGGTTTAGCCCTTGCCAAGGAATTGGGGTGTTTGCTTCTTGAATGTAGTGCTAAAACTCGGGAAAATGTGGAGCAGTGCTTTGAGGAACTTGCTCTAAAGGTTGATCTAGTTGACCCTCTGGCTGGATCAGGTTCAGGTTTACTGATCTTCATAGTTTCAGATTACATGATAACATAA 603 0.4212 MSSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLSPTIGVDFKIKTLTLGGKRMKLTIWDTAGQERFRTLTSSYYRKAQGIILVYDVTRRETFTNLSEVWSKEVELYSTNQDCVKMLVGNKVDRDSERAVSREEGLALAKELGCLLLECSAKTRENVEQCFEELALKVDLVDPLAGSGSGLLIFIVSDYMIT 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02849 200 ProSiteProfiles small GTPase Arf family profile. 8 179 - -
Spst1g02849 200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 175 IPR027417 -
Spst1g02849 200 Gene3D - 1 177 IPR027417 -
Spst1g02849 200 Pfam Ras family 16 175 IPR001806 GO:0003924|GO:0005525
Spst1g02849 200 PRINTS Transforming protein P21 ras signature 119 132 - -
Spst1g02849 200 PRINTS Transforming protein P21 ras signature 55 77 - -
Spst1g02849 200 PRINTS Transforming protein P21 ras signature 154 176 - -
Spst1g02849 200 PRINTS Transforming protein P21 ras signature 15 36 - -
Spst1g02849 200 PRINTS Transforming protein P21 ras signature 37 53 - -
Spst1g02849 200 ProSiteProfiles small GTPase Rab1 family profile. 10 200 - -
Spst1g02849 200 SMART rho_sub_3 17 176 IPR001806 GO:0003924|GO:0005525
Spst1g02849 200 PANTHER RAS-RELATED PROTEIN RAB 14 175 - -
Spst1g02849 200 ProSiteProfiles small GTPase Ras family profile. 6 200 IPR001806 GO:0003924|GO:0005525
Spst1g02849 200 SMART arf_sub_2 5 180 - -
Spst1g02849 200 ProSiteProfiles small GTPase Rho family profile. 8 179 - -
Spst1g02849 200 CDD Rab18 15 176 - -
Spst1g02849 200 SMART ran_sub_2 20 198 - -
Spst1g02849 200 FunFam Ras-related protein RABC1 8 191 - -
Spst1g02849 200 SMART ras_sub_4 12 179 - -
Spst1g02849 200 SMART rab_sub_5 15 179 - -
Spst1g02849 200 NCBIfam small GTP-binding protein domain 15 171 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02849 Spst-Chr1 37062964 37066806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02849 14 169 EF-hand Containing Proteins AT5G27540 27.500 5.93e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02849 K07910 - gmx:100799887 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02849 1 37062964 37066806 Spst1g02849 1 37062964 37066806 ECH
Spst1g02849 1 37062964 37066806 Spst7g01005 7 17786132 17788874 PCT