Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02847 ATGGTTAAGGCATACCTCCGATTCGAGCCGGCGGCATCGTTTGGGGTGATAGCGTCGGTGGATTCCAACATAGCATACGACAGTTCCGGTAAGCACCTTCTCTCGCCGGCACTCGAGAAGATCGGCGTCTGGCACGTGCGGCAGGGCCTCTGCACCAAAACCCTAACTCCTTCCACTCCGTCGCAGGGTCCTTCCATCGCCGTCACCTCCATTGCCTCCTCGCCTTCCTCATTGATTGCTAGTGGTTACGGGGATGGTAGCATAAGGATTTGGGACTCTGATAAAGGAGCGTGTGAGACTACGCTAAATGGACACAAGGGAGCTGTCACTGCTCTTCGTTACAACAAGGCTGGTTCCTTGCTTGCTTCTGGTAGCAAGGATAATGATGTTATTTTATGGGATGTGGTTGGCGAGACTGGGCTTTTTCGCCTTCGCGGTCATCGTGACCAGGTGACTGACGTCGTTTTTTTGAGTTCTGGGAAAAAGCTTGTTAGTTCCTCCAAAGACAAGTTCTTGAGAGTGTGGGATCTTGATACCCAGCACTGTATGCAAATTGTGGGTGGTCATCATAGTGAAATATGGTCCCTAGATGTTGATCTGGATGAAAGATATCTGGTCAGTGGTTCTGCAGATAATGAACTTCGTTTTTATGCGATCAGGCATGAGTCTGTGGATGGGGAGTCTGTAAATGGTGGTGAAGAATCTTCCTTTAAAAACAAATGGGAAGTGTTGAGGCATTTTGGTGAAATTCAGCGACAAAGTAAGGATAGAGTTGCAAATGTACAGTTCAACAAGTCTGGAAATCTGTTAGCTTGCCAAGTTGCAGGAAAGACAGTTGAAATATATCGTGTATTGGATGATGCTGAAGCAAAGCGCAAGGCAAAACGAAGGGTTCACCGTAAGAAAGAGAAGAAACATAGTAAAGAGTCTTTGGAGGGAGTAGAAAATGGAGAAGGGAATAATGATAGCAAAGGAGATAACTCTTCTGTCACTCATGCGCTCACAGAAACAACTGACCCCCTTACTACTGTGTCTGATGTTTTTAAACTGTTGCATACTATTAGAGCTAACAAAAAGATATGCTCCATTTCTTTCTGTCCAATCACTCCAAAAAATTCATTGGCTAGTTTAGCATTGTCTCTGAACAATAATCTTCTTGAGTTTTACTCCATTGAACTCGGTGAAACCAAAAAAACACTCACTATTGATCTTCAAGGGCATCGTTCTGATGTTAGAAGTGTTACGCTTAGTTCAGACAACACTTTTCTTATGTCAACCAGTCACAATGCAGTAAAGATTTGGAACCCAAGTACTGGCACTTGCCTAAGGACCATTGATTCTGGGTATGGACTGTGCAGTTTAATTCTTCCCTCTAACAAGTATGGACTTGTTGGAACCAAAGATGGAACCATAGAAATTATTGACATTGGAAGTGGCACTTGCGTTGAAGTAATGGAGGCTCATGGTGGTTCTGTGCGCTCAATTGCTGCCCTACCACATAAAAATGGTTTTGTCACAGGAAGTGCCGATCATGATGTAAAATTTTGGGAGTACCAATTCAAGCAAAAACCGGGTCAAACTACCAAGCAACTCGTAGTGTCAAATGTCAGTACCATGAAAATGAATGATGATGCGCTTGTGGTTGCAATTAGCCCTGATGCCAAATATATTGCTGTTGCTCTTTTGGATAGTACTGTGAAGGTTCACTTTGCCGACACATTCAAATTTTTCCTTTCATTGTATGGCCACAAGCTGCCTGTTCTGTGTATGGATATCTCATCAGATGGAGATTTAATTGTGACAGGATCTGCTGATAAAAATTTAAAGATCTGGGGTTTAGACTTTGGTGACTGTCATAAATCCATTTTTGCACATGCTGACAGTGTTATGGCAGTGCAATTTGTTCCCAAGACACATTATGTGTTCAGTGTTGGAAAAGATCGCCTAGTAAAATATTGGGATGCTGATAAATTTGAGCTATTGTTGACTCTAGAAGGACATCATGCTGATATTTGGTGTCTTGCTGTCAGTAATCGTGGGGATTTCATTGTCACTGGATCTCATGATCGTTCTATCCGTCGCTGGGATCGCACTGAAGAGCAGTTTTTCATCGAGGAAGAAAAGGAGAAACGGTTGGAGGAAATGTTTGAGGCTGATCTTGACAATGCATTTGAAAACAAGTATGCATCAAAGGAAGAAATACCAGAGGAGGGAGTGGTGGCTTTAGCTGGGAAACAAACCCAGGAAACCCTTTCTGCAACTGACTTAATTATTGAAAGATTAGATATTGCCGAAGCTGAAAAAAAGCGTCTTGCAGAACATCAGGAGGAGAAAAATAACAGAACTGTTGCTGTTTTTCAATCAAATCCGCTAATGAATGGGCTTTCACCTTCTGATTATGTTCTTAGTGCATTTTCAAATGTTCACTCCAATGATTTGGAGCAAACATTACTGGCTTTACCATTTTCAGATGGATTGAAGCTTATGTCGTACTTGAAAGACTGGACTTCATATTCTGATAAGGTTGAGCTTGTTTGCAGAATCGGTACGCTACTGATGCAGACACATTACAACCAGCTTCTTGCCACACCAGCTGCCCGACCTATCTTGACTGTTTTCAGTGACATTTTTTATGAAAGGGTCAAGGTAAATATGCTAGCCATGGATCATATTCAGCAAATGATGGCTTCAAGATCAGATGCTCTTTTTCATGATGCAAGATCAAAACTGCTAGAGATGCGTGCTCGACAAACCAAACGTTTAGGAGAAAGGTCAGATACTGGAGAAGTGAAGCGGAAGAAGAAAAAGGCATAA 2814 0.4254 MVKAYLRFEPAASFGVIASVDSNIAYDSSGKHLLSPALEKIGVWHVRQGLCTKTLTPSTPSQGPSIAVTSIASSPSSLIASGYGDGSIRIWDSDKGACETTLNGHKGAVTALRYNKAGSLLASGSKDNDVILWDVVGETGLFRLRGHRDQVTDVVFLSSGKKLVSSSKDKFLRVWDLDTQHCMQIVGGHHSEIWSLDVDLDERYLVSGSADNELRFYAIRHESVDGESVNGGEESSFKNKWEVLRHFGEIQRQSKDRVANVQFNKSGNLLACQVAGKTVEIYRVLDDAEAKRKAKRRVHRKKEKKHSKESLEGVENGEGNNDSKGDNSSVTHALTETTDPLTTVSDVFKLLHTIRANKKICSISFCPITPKNSLASLALSLNNNLLEFYSIELGETKKTLTIDLQGHRSDVRSVTLSSDNTFLMSTSHNAVKIWNPSTGTCLRTIDSGYGLCSLILPSNKYGLVGTKDGTIEIIDIGSGTCVEVMEAHGGSVRSIAALPHKNGFVTGSADHDVKFWEYQFKQKPGQTTKQLVVSNVSTMKMNDDALVVAISPDAKYIAVALLDSTVKVHFADTFKFFLSLYGHKLPVLCMDISSDGDLIVTGSADKNLKIWGLDFGDCHKSIFAHADSVMAVQFVPKTHYVFSVGKDRLVKYWDADKFELLLTLEGHHADIWCLAVSNRGDFIVTGSHDRSIRRWDRTEEQFFIEEEKEKRLEEMFEADLDNAFENKYASKEEIPEEGVVALAGKQTQETLSATDLIIERLDIAEAEKKRLAEHQEEKNNRTVAVFQSNPLMNGLSPSDYVLSAFSNVHSNDLEQTLLALPFSDGLKLMSYLKDWTSYSDKVELVCRIGTLLMQTHYNQLLATPAARPILTVFSDIFYERVKVNMLAMDHIQQMMASRSDALFHDARSKLLEMRARQTKRLGERSDTGEVKRKKKKA 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02847 937 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 664 696 - -
Spst1g02847 937 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 622 654 - -
Spst1g02847 937 ProSitePatterns Trp-Asp (WD) repeats signature. 121 135 IPR019775 -
Spst1g02847 937 Coils Coil 761 781 - -
Spst1g02847 937 PRINTS G protein beta WD-40 repeat signature 79 93 IPR020472 -
Spst1g02847 937 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Spst1g02847 937 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Spst1g02847 937 ProSiteProfiles Trp-Asp (WD) repeats profile. 485 517 IPR001680 GO:0005515
Spst1g02847 937 Pfam Dip2/Utp12 Family 799 882 IPR007148 -
Spst1g02847 937 CDD WD40 400 696 - -
Spst1g02847 937 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 621 IPR001680 GO:0005515
Spst1g02847 937 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 72 701 IPR011047 -
Spst1g02847 937 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 179 - -
Spst1g02847 937 ProSiteProfiles Trp-Asp (WD) repeats profile. 404 444 IPR001680 GO:0005515
Spst1g02847 937 SMART WD40_4 615 654 IPR001680 GO:0005515
Spst1g02847 937 SMART WD40_4 240 283 IPR001680 GO:0005515
Spst1g02847 937 SMART WD40_4 438 475 IPR001680 GO:0005515
Spst1g02847 937 SMART WD40_4 478 517 IPR001680 GO:0005515
Spst1g02847 937 SMART WD40_4 179 218 IPR001680 GO:0005515
Spst1g02847 937 SMART WD40_4 137 176 IPR001680 GO:0005515
Spst1g02847 937 SMART WD40_4 532 570 IPR001680 GO:0005515
Spst1g02847 937 SMART WD40_4 657 696 IPR001680 GO:0005515
Spst1g02847 937 SMART WD40_4 95 134 IPR001680 GO:0005515
Spst1g02847 937 SMART WD40_4 397 435 IPR001680 GO:0005515
Spst1g02847 937 SMART WD40_4 48 92 IPR001680 GO:0005515
Spst1g02847 937 SMART WD40_4 573 612 IPR001680 GO:0005515
Spst1g02847 937 FunFam Transducin family protein / WD-40 repeat family protein 335 448 - -
Spst1g02847 937 Gene3D - 645 709 IPR015943 GO:0005515
Spst1g02847 937 ProSiteProfiles Trp-Asp (WD) repeats profile. 622 663 IPR001680 GO:0005515
Spst1g02847 937 SUPERFAMILY Putative isomerase YbhE 22 94 - -
Spst1g02847 937 FunFam Transducin family protein / WD-40 repeat family protein 60 320 - -
Spst1g02847 937 Coils Coil 285 305 - -
Spst1g02847 937 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 220 IPR001680 GO:0005515
Spst1g02847 937 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Spst1g02847 937 ProSitePatterns Trp-Asp (WD) repeats signature. 163 177 IPR019775 -
Spst1g02847 937 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 580 614 - -
Spst1g02847 937 Gene3D - 15 318 IPR015943 GO:0005515
Spst1g02847 937 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 135 IPR001680 GO:0005515
Spst1g02847 937 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 4 935 - -
Spst1g02847 937 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 135 - -
Spst1g02847 937 MobiDBLite consensus disorder prediction 293 331 - -
Spst1g02847 937 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 696 IPR001680 GO:0005515
Spst1g02847 937 CDD WD40 98 517 - -
Spst1g02847 937 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 485 517 - -
Spst1g02847 937 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 101 IPR001680 GO:0005515
Spst1g02847 937 FunFam WD repeat domain 3 449 641 - -
Spst1g02847 937 Gene3D - 319 446 IPR015943 GO:0005515
Spst1g02847 937 MobiDBLite consensus disorder prediction 917 937 - -
Spst1g02847 937 Pfam WD domain, G-beta repeat 62 92 IPR001680 GO:0005515
Spst1g02847 937 Pfam WD domain, G-beta repeat 181 217 IPR001680 GO:0005515
Spst1g02847 937 Pfam WD domain, G-beta repeat 578 611 IPR001680 GO:0005515
Spst1g02847 937 Pfam WD domain, G-beta repeat 97 134 IPR001680 GO:0005515
Spst1g02847 937 Pfam WD domain, G-beta repeat 403 435 IPR001680 GO:0005515
Spst1g02847 937 Pfam WD domain, G-beta repeat 142 176 IPR001680 GO:0005515
Spst1g02847 937 Pfam WD domain, G-beta repeat 479 516 IPR001680 GO:0005515
Spst1g02847 937 Pfam WD domain, G-beta repeat 659 696 IPR001680 GO:0005515
Spst1g02847 937 Gene3D - 447 644 IPR015943 GO:0005515
Spst1g02847 937 FunFam WD repeat-containing protein 3 isoform A 650 708 - -
Spst1g02847 937 MobiDBLite consensus disorder prediction 316 331 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02847 577 705 Miscellaneous Gene Families AT5G08390 27.132 1.21e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02847 K14556 - gmx:100775810 1676.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02847 1 37031367 37040872 Spst1g02847 1 37031367 37040872 ECH