Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02823 ATGAGAGAGGAAGCTGATGCTGCTGCAGATGAAAATGGCGAGTGGTTAATAGCATATGTGAATTTCCATCTTCTGATTATATGCAGGGGATCGCAAGAGCAACAATCACAGGATGGTACTTCACAGTCACAGTCGTGGTATCCGCCATCAGTTGTAAGTTCACCGAGTTCATCAAGGCCTGTTACACCGTCTGGATCTTCTTCTTCATTGTCACATAGGCCTTCTTCTCATGTTCCACCTTCTGAAGCTGCTGGAGTTATTGCCGTTTTGAAGGACAAGAGTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAGCAGTTTTTACATTCGCTTGACCAGGTCAAGATTCAAACTAATCTGAAAGATGAACTTTGCAAGGAGAATGTACAGCTTGCAGAGGAAAATCTCCAGAAGGAACCTCGTATCATGGAACTTAGGAATCAATGTAGAATAATTCGGACAACCGAGTTAGCTGCCGCAAAGGAGAAACTAAATGAGCTTGAGAAGCAAAAGGAAGAAATGTTGAAGTTGAATTCGCCAGCATCCCTTATCCAGAGGATTCAAGAGTCTGCGAATAAGACTGAAGAGGAATCTGACAATCTACACCAGCATTTCCTTGACAGAGAGATTGATCTTGGGGCTTTCTTGCAAAAGTACAAAAAGCTACGTACCACTTACCACAGGAAGACTCTCATACATCTTGCTGCCAAAACATCAACAATATGA 738 0.4268 MREEADAAADENGEWLIAYVNFHLLIICRGSQEQQSQDGTSQSQSWYPPSVVSSPSSSRPVTPSGSSSSLSHRPSSHVPPSEAAGVIAVLKDKSVDELRKLLSDKDAYQQFLHSLDQVKIQTNLKDELCKENVQLAEENLQKEPRIMELRNQCRIIRTTELAAAKEKLNELEKQKEEMLKLNSPASLIQRIQESANKTEEESDNLHQHFLDREIDLGAFLQKYKKLRTTYHRKTLIHLAAKTSTI 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02823 245 MobiDBLite consensus disorder prediction 33 80 - -
Spst1g02823 245 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37 39 243 - -
Spst1g02823 245 SUPERFAMILY Endosomal sorting complex assembly domain 183 233 IPR037202 -
Spst1g02823 245 Coils Coil 188 208 - -
Spst1g02823 245 ProSiteProfiles VPS37 C-terminal domain profile. 165 245 IPR009851 -
Spst1g02823 245 Coils Coil 154 181 - -
Spst1g02823 245 Pfam Modifier of rudimentary (Mod(r)) protein 91 234 IPR009851 -
Spst1g02823 245 Gene3D Helix hairpin bin 169 237 IPR029012 -
Spst1g02823 245 MobiDBLite consensus disorder prediction 33 76 - -
Spst1g02823 245 FunFam Vacuolar protein-sorting-associated protein 37 homolog 1 169 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02823 Spst-Chr1 36745703 36755536 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02823 K12185 - gmx:100305851 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02823 1 36745703 36755536 Spst1g02823 1 36745703 36755536 ECH