Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02820 ATGAAGATCCTCGAGAAAGATTTCGCCCTGAATCAAACTGGAACTGCTAAGCTCATGGCGGAAGAACCCGACGACGTGTGGGTCCTCTACAACCTCATCCTCCCCGGCGACGTCGTTTCCGCCGACACCACGCGCAAGGTTTACCTCGATTCCTCCACCAAGAAAAACAACGCCTCACGTGTCAAGCTCACCCTCCACCTCAAAGTCACCAGCCGCGACTTCCACAAAGACTCCTCCACCCTCCGCCTCCACGGCCGCAACCTCCAACCCAACCAACATGTCGCATCCGGCTCCTTCCACACGCTCTCCCTCGAACCCCAGAAATCCTTCATCCTCCGCAAAAATCTCTGGCAGAACGAGGCCCTCCAAACCCTGAATGACACCACCCAAAAAGAAAATTCCAAATCCAATTCCAGTTCCATTTCCGACCTCGCCGTCGTTCTCTTCCACCCGCACCACGCCGAGATCCACGTCGTTAAAGAAGGAGCCTCCACGCGTTGCACCAAGGTCGAATCCTCTCCCAACTCGAGAAAAAATGGAAACGTTTCTTCCTCCGTGTTTTTCCGCCGAGTGTTTGCGGCGTTGGTGAAGCACGTGGATTTCAAGGTTGTGAAGAGCATGGTGGTGACGAGCGAGGAGTTTCGCAGGTTTGCGGTGTCGGAAGCGAGGAAGTTGAGGATACGGTGGATCGAGGAGAACCAGACGCGCATGGTGGTCGTGGAGGGTGGCGATAGTTTGGAGAAAGTTTTGGGTGATCGGGCGGTGACGGAGTTGGTGAATGACAGCAGGGTCGGGGCGTTCAGGGATTTGTGGGAGATGGTGTGCAACGATTCGGGGCGCGCGTGTTATGGACCCAAGGAGGTGGAGCGTGCGATAGAAATGAGAGCGATTGAGACACTTTTGATTACCGATGATCTTTACAGGAACGAGGAAGTTGGTACGAGGCAGAGGTACTCGGGTCTGTTGAAATCGGTGAAAGACGGTGGAGGAAGGGCTTTGGTGTATTCGCCGATGCATGTTTCGGCGCCGCAACTGGAGCAGCTCACCGGCGTTGCCGCTATTCTCCGGTTTCCCTTGCCTGATCTTGAACTCCAAGATGGTAAATGGTGTTAA 1113 0.5472 MKILEKDFALNQTGTAKLMAEEPDDVWVLYNLILPGDVVSADTTRKVYLDSSTKKNNASRVKLTLHLKVTSRDFHKDSSTLRLHGRNLQPNQHVASGSFHTLSLEPQKSFILRKNLWQNEALQTLNDTTQKENSKSNSSSISDLAVVLFHPHHAEIHVVKEGASTRCTKVESSPNSRKNGNVSSSVFFRRVFAALVKHVDFKVVKSMVVTSEEFRRFAVSEARKLRIRWIEENQTRMVVVEGGDSLEKVLGDRAVTELVNDSRVGAFRDLWEMVCNDSGRACYGPKEVERAIEMRAIETLLITDDLYRNEEVGTRQRYSGLLKSVKDGGGRALVYSPMHVSAPQLEQLTGVAAILRFPLPDLELQDGKWC 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02820 370 SMART eRF1_1_2 1 130 IPR005140 -
Spst1g02820 370 Gene3D eRF1 domain 2 142 259 IPR042226 -
Spst1g02820 370 SUPERFAMILY Dom34/Pelota N-terminal domain-like 1 128 IPR038069 -
Spst1g02820 370 Pfam eRF1 domain 3 269 359 IPR005142 -
Spst1g02820 370 Pfam eRF1 domain 1 1 128 IPR005140 -
Spst1g02820 370 Gene3D Pelota, domain A 1 131 IPR038069 -
Spst1g02820 370 PANTHER PELOTA 1 363 IPR004405 GO:0070481|GO:0070966|GO:0071025
Spst1g02820 370 Gene3D - 262 368 IPR029064 -
Spst1g02820 370 FunFam Protein pelota homolog 1 131 - -
Spst1g02820 370 FunFam Protein pelota homolog 260 369 - -
Spst1g02820 370 SUPERFAMILY Translational machinery components 142 263 - -
Spst1g02820 370 SUPERFAMILY L30e-like 266 362 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02820 Spst-Chr1 36739231 36740343 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02820 K06965 - gmx:100803618 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02820 1 36739231 36740343 Spst1g02820 1 36739231 36740343 ECH