Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02817 ATGGGGAGGAGTAGCGGAAGAGACCGAAGACGAAGAAGATCGGATGAGTCCCAATCCGAGTCAACTTCCGACTCCGACTCGGACAGACGCCACCGTAGTAGTAGCCGCCGGTCTCGGCATGACTCCGACGGCGACAGGAAGAAGAAGTCCTCAAGGAACATCACAGAAGAGGAAATCACGCAGTACATGGCCAAAAAGGCCCAAACAAAGGCTATGAAAGTCGCGAAAAAGTTGAAAACCAGTACGGTGTCGGGCTATTCCAACGATTCGAATCCGTTTGGTGACTCCAATCTCAACGAGAAATTTGTTTGGCGCAAGAAGATTGAACGCGATGTTTCTCAAGGTGTGTCTATTGAAACGTTTTCAGTTAAGGCCGAGAAAAAGAGACAGAGAGAAAGGATGGCAGAAATTGAAAAAGTGAAGAAGAGAAGAGAGGAAAGGGCACTTGAGAAAGCACGACATGAGGAAGAAATGGCACTCTTAGCTAGAGAACGTGCTAGAGCTGAGTTTCAGGACTGGGAAAAGAAAGAAGAAGAGTTCCATTTTGATCAAAGTAAAGTTAGGTCAGAAATTAGATTGCGTGAAGGGCGTGCCAGACCAATTGATGTCCTAACCAAGCATCTCAATGGCTCTGATGATTTGGATATAGAAATAAATGAACCGTATATGGTCTTTAAGGGCTTGACTGTAAACGAAATGAATGAGCTACGTGACGACATCAAAATGCATCTGGACCTTGACAGGGAAACACCAACTCATGTAGATTATTGGGAGGCACTCCTTCTGGTGTGTGATTGGGAGCTAGCTGAAGCTCGGAAAAAGGATGCGCTTGATCGAGCTAGGGTGCGTGGAGAAGAACCTCCTGCTGAGCTTCTTGCAGAAGAAAGGGGTCTCCATTCCAGTGTTGAGCCAGATGTGAAGATCCTTTTGCAGGGGAAGACACATGCAGAATTGGAGGCTTTACGGGTTCACATTGAATCAGAAATGCGTACTGGTACAGCAAAGGTGGTTGAGTACTGGGAGGCCATTTTAAAACATCTCCACATTTATAAAGCCAAGGCTTGTTTAAAAGAAATTCATGCTAAATTGCTACGTAAGCATTTGCAATCCCTAGAGAAACCATTGGAGGATGAAGATAAATTGGAGGATGCTAACATAATGATACCTGAGGAGGAGGAAGATACTGGGGATGATATTAAGGTCCGATCTCCAGATAAATCATTTTCACCGGAGCCCATTATAGAAGAGCAAGAAGCTGAAGACGAGGCTGGATCATTTTCGCCACAACTGTTGCATGGTGATGAAAGTGAGGAAGCTATTGACCCTGAAGAGGACAGAGCCATGCTGGAGCGGAATCGTAAGGCTGTATTAGAAGAGCAACAAAGACGAGTTCAGGAAGCAATGGCATCAAAGCCAGCTCCTTCTGAAGATAATTTTGAGATGAAGGCCTTAAAAGCTATGGGAGATATGGAGGATGGAGATGCTGTGTTTGGATCTGGTGCTGAAGTGAACCTGGATTCCCAGGTTTACTGGTGGCATGACAAATACAGGCCTAGGAAGCCGAAGTATTTCAATCGTGTTCACACTGGATACGAGTGGAACAAATATAATCAGACTCATTATGATCATGACAACCCACCTCCAAAGATTGTGCAAGGATACAAATTTAATATTTTCTATCCTGATCTAGTAGACAAGACAAAAGCTCCAACCTACACCATTGAGAAGGATGGCAGCAATGGGGAGACTTGCATTATAAGATTTCATGCTGGGCCACCATACGAAGACATAGCTTTTCGCATCGTAAACAAAGAATGGGAATATTCACATAAGAAAGGTTTTAAGTGCACATTTGAACGTGGAATTCTGCATGTGTACTTCAATTTCAAACGCCACCGCTACCGCAGATAA 1911 0.4448 MGRSSGRDRRRRRSDESQSESTSDSDSDRRHRSSSRRSRHDSDGDRKKKSSRNITEEEITQYMAKKAQTKAMKVAKKLKTSTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVSQGVSIETFSVKAEKKRQRERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRARPIDVLTKHLNGSDDLDIEINEPYMVFKGLTVNEMNELRDDIKMHLDLDRETPTHVDYWEALLLVCDWELAEARKKDALDRARVRGEEPPAELLAEERGLHSSVEPDVKILLQGKTHAELEALRVHIESEMRTGTAKVVEYWEAILKHLHIYKAKACLKEIHAKLLRKHLQSLEKPLEDEDKLEDANIMIPEEEEDTGDDIKVRSPDKSFSPEPIIEEQEAEDEAGSFSPQLLHGDESEEAIDPEEDRAMLERNRKAVLEEQQRRVQEAMASKPAPSEDNFEMKALKAMGDMEDGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRHRYRR 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02817 636 Pfam Conserved mid region of cactin 163 360 IPR018816 -
Spst1g02817 636 MobiDBLite consensus disorder prediction 1 61 - -
Spst1g02817 636 Pfam Cactus-binding C-terminus of cactin protein 512 636 IPR019134 GO:0005515
Spst1g02817 636 MobiDBLite consensus disorder prediction 395 413 - -
Spst1g02817 636 Coils Coil 127 171 - -
Spst1g02817 636 MobiDBLite consensus disorder prediction 1 55 - -
Spst1g02817 636 SMART CactinC_cactus_3 512 636 - -
Spst1g02817 636 PANTHER POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 34 636 - -
Spst1g02817 636 MobiDBLite consensus disorder prediction 388 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02817 Spst-Chr1 36710563 36720274 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02817 K25058 - gmx:100780087 1100.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02817 1 36710563 36720274 Spst1g02817 1 36710563 36720274 ECH