Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02812 ATGGAGATGACAGAGTTTGTCAAATCAGAGATTCCTTTCTCTTTTAAGGCTATTCCACCAGTTGGTTGGGCCCTCACTAACATTATCTGCTTAGCAACAGGGAATGAGAATGAATCCTTCAATCAAGGTTTAGACCATGCATTGTATGTCCGTGTTGTTATTACATTAGCCGAGGCTCTACTGGCTTGTCTTGATAATATTGGATGGGTCAGAAAGAAAAAGAAAGCCTTTCAAACTGATGTTGAAAGTTCAACACAGCCAGTTGATGCAGTTCAGCACGAGGGTGAAGAAACCAATGAATCCTTAATATTGTCATACATGGATCAATTTAGGCCTGTTTGTCAGCAGTGGCATCTCAAAATTCTTTTGGCATCAATTGATGGAGATTCCATTAACAAGGCTGAGACTGTGCTAGAACTCTGTGATGTTGCACTTTTTTATTCTAACCTACTTAGAATATTTTCAGTCTTGAGTCCAATTCGTGCCTCATTATCAGTTCTCAACATGCTATCATTCACTCCAGGATTTCTTTTGAGGTTATGGAGTGTACTGGAGGGTTCCTTTTTCTCTGGAGACAAATATAATTCTGATAGTCACACAAGTGAAAACAGAAAACATAAAGCCTTTGAGAAGATGCACAAACATGTCAGCAAAGACGGGGTTAATAAGTGGGTCAATGTACTTCATAAATTTACAGGTATGTCACGAGCAGCAACAGAGTGCACTGATTTTATTGGCAGTCACTCTGAGCCTAGCAGAGTAGATGAGGATTCATCAGATATATGGGACATAGAACCTATGAGGCATGGACCACAAGGCATTCCAAAGGATATGTTTGCTGTGCTTCATCTCTTCTGTGCGGCCTATTCTCACCTGCTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAACAGGTTCCATTCAAAATAGAGCAGCAAAGAAGAATTGCATCAATGCTAAATACCCTTGTTTATAATGGCTTGTCTCATGTTAGTGGTCATCATAATAGGCCTCTCATGGATTGCGCTGTCAGATGCTTACATTTACTGTATGAAAGGGATTGCAGACACCCATTTTGCCCCCCTGCTTTGTGGCTTTCTCCTGCTAGAAGGAGTCGGCCACCAATTGCAGTCGCTGCCAGAACTCATGAAGTTTTAGTAGCGAACCTGAAATATGACGATTCATCAGCCTTATTGAGTGCAGGTTCTGTTGTCACCATTGTTCCTCACATTTTCCCTTTTGAGGAAAGAAGGGTAAGAGTTGAGATGTTTCGTGAATTCATCAAGATGGATAAAGCATCTCGAAAAATGGCTGGTGAAATTTCTGAACCTGGTTCACGAGCCATTGAGATTGTAGTACGTCGGGGTCATGTTGTTGAAGATGGATTTCGGCAATTAAATTCCCTTGGGTCAAGGTTGAAGTCATCTATCCATGTATCATTTGTTAGTGAATGTGGTCTTCTTGAAGCTGGCCTGGACTATGGTGGATTATCTAAAGAGTTTCTGACTGACTTATCAAAAGCAGCATTTGCTCCCGAATATGGACTCTTTTCCCAAACCTCAACTTCAGACAGGCTTCTAATTCCAACTGCATCTGCTAGATATTTGGAGAATGGTCTTCAGATGATTGAGTTCCTTGGAAGAGTAGTGGGGAAAGCTCTATATGAAGGAATATTACTCGATTACTCTTTCTCCCATGTTTTTGTACAAAAGCTTTTGGGACGTTATAGCTTTCTTGATGAATTATCAACCCTTGATCCAGAGCTATACAGAAATCTTATGTATGTCAAGAATTATGATGGTGATGTCATGGAGCTCTGTCTTGATTTCACAGTTACTGAAGAATCATTGGGCAAAAGGTATGTGGTTGAACTTAAGTCTGGTGGCAAAGATATTTATGTGACGAATGAGAACAAGATGCAGTACATGCATGCAATGGCAGACTATAAACTCAACCAACAGATGTTGCCCTTTTCAAATGCGTTTTATAGAGGGTTAACTGATCTTATATCTCCATCCTGGTTGAAGTTATTCAATGCTAGTGAATTTAATCAGTTGCTTTCAGGTGGGAATTATGATATTGATGTTGATGATCTGAAAGATAACACACGATACACGGGTGGTTACAATGAGGGAAGCCGTACAATCAAGATTTTTTGGGAGGTAGTTAAAGGCTTTGAACCTGAAGAGCGTTGTTTGCTTCTCAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCACCATTTACCATCCACAAGGTTGCTTGCGATGTTCCTCTTTGGGCAACAATTGGAGGACAAGATGTAGATCGGCTTCCATCAGCTTCAACCTGCTACAATACACTCAAGCTTCCAACATACAAACGTCCAGGCACCTTGAGAGCAAAGCTTCTATATGCTATCAGTTCAAATGCCGGATTTGAACTTTCTTGA 2454 0.4059 MEMTEFVKSEIPFSFKAIPPVGWALTNIICLATGNENESFNQGLDHALYVRVVITLAEALLACLDNIGWVRKKKKAFQTDVESSTQPVDAVQHEGEETNESLILSYMDQFRPVCQQWHLKILLASIDGDSINKAETVLELCDVALFYSNLLRIFSVLSPIRASLSVLNMLSFTPGFLLRLWSVLEGSFFSGDKYNSDSHTSENRKHKAFEKMHKHVSKDGVNKWVNVLHKFTGMSRAATECTDFIGSHSEPSRVDEDSSDIWDIEPMRHGPQGIPKDMFAVLHLFCAAYSHLLLVLDDIEFYEKQVPFKIEQQRRIASMLNTLVYNGLSHVSGHHNRPLMDCAVRCLHLLYERDCRHPFCPPALWLSPARRSRPPIAVAARTHEVLVANLKYDDSSALLSAGSVVTIVPHIFPFEERRVRVEMFREFIKMDKASRKMAGEISEPGSRAIEIVVRRGHVVEDGFRQLNSLGSRLKSSIHVSFVSECGLLEAGLDYGGLSKEFLTDLSKAAFAPEYGLFSQTSTSDRLLIPTASARYLENGLQMIEFLGRVVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKNYDGDVMELCLDFTVTEESLGKRYVVELKSGGKDIYVTNENKMQYMHAMADYKLNQQMLPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGNYDIDVDDLKDNTRYTGGYNEGSRTIKIFWEVVKGFEPEERCLLLKFVTSCSRAPLLGFKYLQPPFTIHKVACDVPLWATIGGQDVDRLPSASTCYNTLKLPTYKRPGTLRAKLLYAISSNAGFELS 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02812 817 Gene3D Hect, E3 ligase catalytic domain 575 654 - -
Spst1g02812 817 CDD HECTc 449 815 IPR000569 GO:0004842
Spst1g02812 817 Gene3D Hect, E3 ligase catalytic domain 692 816 - -
Spst1g02812 817 FunFam E3 ubiquitin-protein ligase UPL7 692 816 - -
Spst1g02812 817 Pfam HECT-domain (ubiquitin-transferase) 504 817 IPR000569 GO:0004842
Spst1g02812 817 SMART hect_3 467 817 IPR000569 GO:0004842
Spst1g02812 817 SUPERFAMILY Hect, E3 ligase catalytic domain 449 810 IPR035983 GO:0004842
Spst1g02812 817 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 21 817 IPR044611 GO:0000209|GO:0061630
Spst1g02812 817 Gene3D Hect, E3 ligase catalytic domains 451 689 - -
Spst1g02812 817 ProSiteProfiles HECT domain profile. 473 817 IPR000569 GO:0004842
Spst1g02812 817 FunFam Putative Ubiquitin-protein ligase E3C 575 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02812 Spst-Chr1 36658389 36664810 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02812 K10588 - gmx:100527169 1488.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02812 1 36658389 36664810 Spst1g02812 1 36658389 36664810 ECH