Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst1g02793 | ATGGGTTTTGGAACTCGTTCTGCTCTTCGTCTTCCTCCCAATTCGCACTTCAACAATTTCGGTTCCTTCTTCTGCACCCAATCACTCACACTCCGCGAATCCCACCCCCAACACCACCGCCGCCTTAAAAAGGTTCAAAAACTCGAAACATTACTCAACTGCGGACGCACAATCACCGCAAGAAGGTTCCTCAAATCCCTTCTTCTCTCCAAAAGCACATTCTCCTCTCTATCTGAACTCCACGCTCACGTCTCCAAACCCATATTTTCGGACACCCTCTTATGGCTTTGCTCCGTTTCCAAAATGCTCAACGAAGCCACCGACTTGTACTTTTCCATCCGAAAAGACGGATTTCTTCCTTCCACGCGTTCCGTCAACCGTTTGCTCCGAACCCTGGTGGCTTCAAGACATTTCGAGAAAGCCCTTTCTGTATTCGCCGACGTTGTTGATTCTGGTATTCGGCCCGATGTTGTTACATACGGGAAAGCTGTTCAGGCGGCGGTGATGTTGAAGGACCTCGATAAGGGTTTTGAGTTGATGAGTTCCATGGAAAAGGAAGGAGTGGGTCCTTCTGTTTTCTCTTATAACTTGATCTTGGGTGGGTTATGTAAAGTGAGAAGGATCAAGGATGCTCGGAAACTGTTCGATGAAATGATTCAGAGAAATATGGTTCCGAATACTGTTACTTATAACACGCTCATTGATGGGTACTGTAAGGTGGGTGAGTTAGAGGAAGCTTTTGGCTTCAAGGAGAGGATGAAGGAACAGAATGTGGAGTGTAATCTTGTCACGTATAATTGCTTGTTAAATGGCCTTTGTGGCTCCGGGAGGGTGGAAGATGCGAGGGAGGTGTTGTTAGAGATGGAGGGCGGTGGTTTTTTGCCTTGTGGGTTTTTTAGTTTTGTGTTTGATGATGATTCGAATGGTGCAGGTGATCATGGTTTCTTTGATGGAAAAGAAATAAGGATTGATGAGCGAACTTATTGTATTTTGTTGAATGGACTTTGCAGGGTTGGAAGGATTGAAAAGGCTGAAGAGGTTCTGGCCAAACTAGTGGATAATGGGGTTACACCAAGCAAGATTTCATATAACATACTGGTGAATGCATATTGCCAAGAGGGTGACGTGAAGAAAGCTACACTGACAACTGAACGAATGGAGGAACAAGGGTTGCAGCCTAACCGCATTACTTTTAATACCCTCATTAGCAAGTTCTGCGAAACTGGGGAGGTGGACCTGGCAGAGACATGGGTTAAGAGGATGATAGACAAGGATGTGTTCCCCACTGTAGAGACCTATAACTCATTGATTCATGGTTATGGTCAGAGGGGCCACCTTGTCAGGTCTTTCGAGATTCTTGAGGAAATGGAGAAGGCGGGAATAAAGCCAAATGTCATCAGCTATGGTTCTCTAATAAATTGTCTTTGCAAAGATCGTAAGCTTCTTGATGCTGAGATTGTGCTAGCGGATATGATAGGTCGTGGGGTTTCTCCGAATGCAGAAATATATAATATGCTAATTGAAGCTAGTTTCTCATTAAGTAAATTGAAAGATGCTTTCAGATTTTTTGATGAAATGACGCAAAGTGGAATAGATGCAACTCTTGTGACATACAATACGATGATAAATGGACTCGGACGAAATGGAAGGGTAAAGGAAGCTGAGGATCTGTTTCTCCAAATGGCAGGCAAGGGCTGTAATCCAGATGTAGTAACATACAATTCTCTGATCTCTGGATATGCCAAGTCAGTAAACACCCAGAAATGCCTTGAAATTTATGATAGTATGAAGATGGTAGGCATAAAACCTACAATTGGGACTTTTCACCCTTTGATCTATGCATGTAGGAAGGTAGGCATGGTGGAAAGGGAGAGAAGATTTCAGGAAATGTTACAAATGAATTTGGTACCAGATCGATTTGTATATAATGAAATGATTTATAGTTATGCCGAAGATGGAAATGTTCTGAAGGCAATGTCTTTGCACCAACAGATGCTTAATCAGGGAGTTGATCCCGACAAGGTGACTTACAATTGTTTGATTCTAGCTTATTTTAGAGATAGAAGGGTTTCAGAAATAAAGCATCTTGTTAATGATATGAAGGCTAAAGGACTGGTTCCAAAAGTTGATACATATAACATTCTGGTTAAGGGACATTGTGACTTAAAAGATTTCAATGGTGCATACTTTTGGTATAGGGAAATGGTTGATGTGGGTTTGCTTTTAAATGCCAGTATGTGCTCCCTGCTAATTTCCGGACTAAGAGAGGAGGGAATGATGCCAGAGGCCCAAATTGTATCCTCAGAATTGAGCAGTAGAGGACTGAATAACTAG | 2334 | 0.4267 | MGFGTRSALRLPPNSHFNNFGSFFCTQSLTLRESHPQHHRRLKKVQKLETLLNCGRTITARRFLKSLLLSKSTFSSLSELHAHVSKPIFSDTLLWLCSVSKMLNEATDLYFSIRKDGFLPSTRSVNRLLRTLVASRHFEKALSVFADVVDSGIRPDVVTYGKAVQAAVMLKDLDKGFELMSSMEKEGVGPSVFSYNLILGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGELEEAFGFKERMKEQNVECNLVTYNCLLNGLCGSGRVEDAREVLLEMEGGGFLPCGFFSFVFDDDSNGAGDHGFFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVDNGVTPSKISYNILVNAYCQEGDVKKATLTTERMEEQGLQPNRITFNTLISKFCETGEVDLAETWVKRMIDKDVFPTVETYNSLIHGYGQRGHLVRSFEILEEMEKAGIKPNVISYGSLINCLCKDRKLLDAEIVLADMIGRGVSPNAEIYNMLIEASFSLSKLKDAFRFFDEMTQSGIDATLVTYNTMINGLGRNGRVKEAEDLFLQMAGKGCNPDVVTYNSLISGYAKSVNTQKCLEIYDSMKMVGIKPTIGTFHPLIYACRKVGMVERERRFQEMLQMNLVPDRFVYNEMIYSYAEDGNVLKAMSLHQQMLNQGVDPDKVTYNCLILAYFRDRRVSEIKHLVNDMKAKGLVPKVDTYNILVKGHCDLKDFNGAYFWYREMVDVGLLLNASMCSLLISGLREEGMMPEAQIVSSELSSRGLNN | 777 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst1g02793 | 777 | Gene3D | Tetratricopeptide repeat domain | 211 | 301 | IPR011990 | GO:0005515 | |
| Spst1g02793 | 777 | Gene3D | Tetratricopeptide repeat domain | 315 | 414 | IPR011990 | GO:0005515 | |
| Spst1g02793 | 777 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 464 | 498 | IPR002885 | - | |
| Spst1g02793 | 777 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 191 | 225 | IPR002885 | - | |
| Spst1g02793 | 777 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 534 | 568 | IPR002885 | - | |
| Spst1g02793 | 777 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 226 | 260 | IPR002885 | - | |
| Spst1g02793 | 777 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 499 | 533 | IPR002885 | - | |
| Spst1g02793 | 777 | Gene3D | Tetratricopeptide repeat domain | 513 | 625 | IPR011990 | GO:0005515 | |
| Spst1g02793 | 777 | Pfam | PPR repeat | 321 | 349 | IPR002885 | - | |
| Spst1g02793 | 777 | Pfam | PPR repeat | 494 | 527 | IPR002885 | - | |
| Spst1g02793 | 777 | Pfam | PPR repeat | 641 | 670 | IPR002885 | - | |
| Spst1g02793 | 777 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 359 | 393 | IPR002885 | - | |
| Spst1g02793 | 777 | Gene3D | Tetratricopeptide repeat domain | 415 | 512 | IPR011990 | GO:0005515 | |
| Spst1g02793 | 777 | Gene3D | Tetratricopeptide repeat domain | 46 | 210 | IPR011990 | GO:0005515 | |
| Spst1g02793 | 777 | Gene3D | Tetratricopeptide repeat domain | 626 | 776 | IPR011990 | GO:0005515 | |
| Spst1g02793 | 777 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 324 | 358 | IPR002885 | - | |
| Spst1g02793 | 777 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 156 | 190 | IPR002885 | - | |
| Spst1g02793 | 777 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 708 | 742 | IPR002885 | - | |
| Spst1g02793 | 777 | Pfam | PPR repeat family | 672 | 720 | IPR002885 | - | |
| Spst1g02793 | 777 | Pfam | PPR repeat family | 428 | 477 | IPR002885 | - | |
| Spst1g02793 | 777 | Pfam | PPR repeat family | 361 | 406 | IPR002885 | - | |
| Spst1g02793 | 777 | Pfam | PPR repeat family | 535 | 582 | IPR002885 | - | |
| Spst1g02793 | 777 | Pfam | PPR repeat family | 225 | 273 | IPR002885 | - | |
| Spst1g02793 | 777 | PANTHER | OS03G0856100 PROTEIN | 516 | 775 | - | - | |
| Spst1g02793 | 777 | Pfam | Pentatricopeptide repeat domain | 143 | 200 | IPR002885 | - | |
| Spst1g02793 | 777 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 429 | 463 | IPR002885 | - | |
| Spst1g02793 | 777 | SUPERFAMILY | HCP-like | 330 | 595 | - | - | |
| Spst1g02793 | 777 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 121 | 155 | IPR002885 | - | |
| Spst1g02793 | 777 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 261 | 295 | IPR002885 | - | |
| Spst1g02793 | 777 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 638 | 672 | IPR002885 | - | |
| Spst1g02793 | 777 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 673 | 707 | IPR002885 | - | |
| Spst1g02793 | 777 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 569 | 603 | IPR002885 | - | |
| Spst1g02793 | 777 | NCBIfam | pentatricopeptide repeat | 466 | 500 | IPR002885 | - | |
| Spst1g02793 | 777 | NCBIfam | pentatricopeptide repeat | 125 | 157 | IPR002885 | - | |
| Spst1g02793 | 777 | NCBIfam | pentatricopeptide repeat | 193 | 227 | IPR002885 | - | |
| Spst1g02793 | 777 | NCBIfam | pentatricopeptide repeat | 228 | 261 | IPR002885 | - | |
| Spst1g02793 | 777 | NCBIfam | pentatricopeptide repeat | 711 | 743 | IPR002885 | - | |
| Spst1g02793 | 777 | NCBIfam | pentatricopeptide repeat | 502 | 531 | IPR002885 | - | |
| Spst1g02793 | 777 | NCBIfam | pentatricopeptide repeat | 571 | 604 | IPR002885 | - | |
| Spst1g02793 | 777 | NCBIfam | pentatricopeptide repeat | 641 | 673 | IPR002885 | - | |
| Spst1g02793 | 777 | NCBIfam | pentatricopeptide repeat | 327 | 359 | IPR002885 | - | |
| Spst1g02793 | 777 | NCBIfam | pentatricopeptide repeat | 536 | 570 | IPR002885 | - | |
| Spst1g02793 | 777 | NCBIfam | pentatricopeptide repeat | 361 | 394 | IPR002885 | - | |
| Spst1g02793 | 777 | NCBIfam | pentatricopeptide repeat | 675 | 707 | IPR002885 | - | |
| Spst1g02793 | 777 | NCBIfam | pentatricopeptide repeat | 263 | 295 | IPR002885 | - | |
| Spst1g02793 | 777 | NCBIfam | pentatricopeptide repeat | 396 | 429 | IPR002885 | - | |
| Spst1g02793 | 777 | NCBIfam | pentatricopeptide repeat | 432 | 465 | IPR002885 | - | |
| Spst1g02793 | 777 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 394 | 428 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Spst1g02793 | 324 | 776 | Glycosyltransferase | AT1G05670 | 26.327 | 1.55e-53 | 196 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst1g02793 | - | - | gmx:100786292 | 1343.95 |