Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst1g02729 | ATGGCGACGAAGAAGTTACTGAATCCGAGACCATTGCCAACACCAAAACCCTCAACTTCTTCTTCTTCCTCTTCAGCGATCTCAAACCTCCCTCTACCCTCTCCACCCTCTGACACACCCGTGTCCCCAGTTCACTACGCCCGCTTCCTGGACTTCCTGAGGGCCCATTGGGCTCCACCGTTCACTCCAGACTCCCTCCTCCGCTTCCTGAAATCGAAGCTCCACCACCACCCCTCCTTCTCCCAATTCGACTTTCACCTCTTCACCTGGGCCTCCTCCATCGACTCCTTCCGCCACACCCATGCCACTTTCCACTGGATGGCCCGCACCCTCGCCGCCACCCACCGCCTCCCCCAGCTCCGCGCCCTCCTCCACCTTATTGCCACTCACCCCTGCCCCTGTTCCCCCTCCATCTTCTCCTGCCCCCACACCCAACCTATCTTCTCCCACGCCATCCACGCCTTCTCCAAATCCTCCCAACTCCACCACGCCCTCTCTGCATTTCACTCCATGACCAAATTGATAGACTCCAAGCCAAACGTCGCCGTTTTCAACGTCCTGATCCACGCCTTCGTCAAACGAGGTGACCTAAACCAGGCCCTCCAGTTTTACCGTGAGATGGTGGCTACCCACCGCGTTAAGCCTGATGTTTTTACCTTCAATATTTTGATCAGTGGTTACTGTCGGAACTCGCAGTTCGCGTTGGCTCTAGAGGTGTTTCACGAGATGGGGAAAATGGGGTGTGAGCCCAATGTGGTTACTTTTAATACCTTGATGAAGGGGATGTTTAGAGAGGGGAGGGTTGAGGATGCCATTGGGATGGCTCGTGAGATGGTTCAACTAGGGTGTGGGTTTTCGTGTGTTACTTGTGAGATTTTGGTTCAAGGGCTTTGTAAGGAAGGGAAGGTTTTACAGGCGTGTGAGTTGTTGCTGGAGTTTTCTGAAAAGGGGGTTATGCCAGAGGGGTTTGATTGTTTTGCTTTAGTGGAGGTATTGTGTGGGGAAGGGTGTGCTGTGAGAGCGTTGGAAGTTGTCTATGAGTTGTGGAATGGAGGGAGTGTTCCGAGTATGGTTGCTTGTATTGTTGTGGTTGATGGGTTAAGGGGGTTGGGCAAGACTGATGAGGTTCAGAGATTTGTGGAAAGGATGCTTGATGAGGGTATGGTGCTGGATGTTGTGACTTTCAATTGTGTTCTTCGGGATATTTGCGATGCACGGAGAACCAATGAGGCGAATAGATTGATGTTACTTGCTTTGAGCAAGGGTTTGGAACCGGATGACATGACTTATAGGACTTTGGTTATGGGTTATATGGGAGAGGGAGGGAGGGAGGAAGGAGAGTTGTTGGTGAATGAAATGTTGGACAGGGGGTTTATACCTGATCTTGCTTCATACAATAAGTTGATGAGTGGATTGTCTAATTGCAGGCGCTCTAAACAAATTTGA | 1446 | 0.5124 | MATKKLLNPRPLPTPKPSTSSSSSSAISNLPLPSPPSDTPVSPVHYARFLDFLRAHWAPPFTPDSLLRFLKSKLHHHPSFSQFDFHLFTWASSIDSFRHTHATFHWMARTLAATHRLPQLRALLHLIATHPCPCSPSIFSCPHTQPIFSHAIHAFSKSSQLHHALSAFHSMTKLIDSKPNVAVFNVLIHAFVKRGDLNQALQFYREMVATHRVKPDVFTFNILISGYCRNSQFALALEVFHEMGKMGCEPNVVTFNTLMKGMFREGRVEDAIGMAREMVQLGCGFSCVTCEILVQGLCKEGKVLQACELLLEFSEKGVMPEGFDCFALVEVLCGEGCAVRALEVVYELWNGGSVPSMVACIVVVDGLRGLGKTDEVQRFVERMLDEGMVLDVVTFNCVLRDICDARRTNEANRLMLLALSKGLEPDDMTYRTLVMGYMGEGGREEGELLVNEMLDRGFIPDLASYNKLMSGLSNCRRSKQI | 481 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst1g02729 | 481 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL | 63 | 478 | - | - | |
| Spst1g02729 | 481 | NCBIfam | pentatricopeptide repeat | 218 | 252 | IPR002885 | - | |
| Spst1g02729 | 481 | NCBIfam | pentatricopeptide repeat | 253 | 283 | IPR002885 | - | |
| Spst1g02729 | 481 | NCBIfam | pentatricopeptide repeat | 288 | 320 | IPR002885 | - | |
| Spst1g02729 | 481 | NCBIfam | pentatricopeptide repeat | 183 | 216 | IPR002885 | - | |
| Spst1g02729 | 481 | Pfam | PPR repeat family | 215 | 262 | IPR002885 | - | |
| Spst1g02729 | 481 | Pfam | PPR repeat | 288 | 318 | IPR002885 | - | |
| Spst1g02729 | 481 | Pfam | PPR repeat | 429 | 458 | IPR002885 | - | |
| Spst1g02729 | 481 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Spst1g02729 | 481 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 216 | 250 | IPR002885 | - | |
| Spst1g02729 | 481 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 391 | 425 | IPR002885 | - | |
| Spst1g02729 | 481 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 180 | 214 | IPR002885 | - | |
| Spst1g02729 | 481 | MobiDBLite | consensus disorder prediction | 17 | 32 | - | - | |
| Spst1g02729 | 481 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 286 | 320 | IPR002885 | - | |
| Spst1g02729 | 481 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 426 | 460 | IPR002885 | - | |
| Spst1g02729 | 481 | Pfam | PPR repeat | 178 | 208 | IPR002885 | - | |
| Spst1g02729 | 481 | SUPERFAMILY | HCP-like | 165 | 310 | - | - | |
| Spst1g02729 | 481 | Gene3D | Tetratricopeptide repeat domain | 369 | 481 | IPR011990 | GO:0005515 | |
| Spst1g02729 | 481 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 251 | 285 | IPR002885 | - | |
| Spst1g02729 | 481 | Gene3D | Tetratricopeptide repeat domain | 279 | 351 | IPR011990 | GO:0005515 | |
| Spst1g02729 | 481 | Gene3D | Tetratricopeptide repeat domain | 65 | 209 | IPR011990 | GO:0005515 | |
| Spst1g02729 | 481 | Gene3D | Tetratricopeptide repeat domain | 210 | 278 | IPR011990 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Spst1g02729 | 147 | 480 | Glycosyltransferase | AT1G05670 | 31.437 | 7.27e-47 | 171 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst1g02729 | - | - | gmx:100796880 | 747.273 |