Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02720 ATGGATGCCGTAGCATGTTCCCGCCATTTCTCCACTCTTTCCCTTTCTTTCTCTCACAACAGAACCTTGCGTTCTTCTTCTGCCAAATCAATCAAGCTTTCCCCTCCATCCGCCAACGCTTCTTTATCTTCCAGAAACTGGTTCGCGAAAGAGGTATGGGGTTGGGTGAACTCCAACTCCAAAGGCGTGGCCGTGAGATGGGACTCGCGCGGAGTGGTGGTGAGGGCTGAAATGTTTGGCCAATTGACGAGTGGCCTTGAGACTGCATGGAACAAACTCAAAGGAGAAGAGGTTTTGTCTAAAGAGAACATTGTGGAGCCTATGCGAGATATCAGGAGAGCTCTTCTAGAAGCGGATGTTAGTCTTCCTGTGGTCAGAAGGTTTGTGCAGTCTGTCAGTGATCAGGCTGTGGGTGTTGGTGTCATTCGAGGGGTGAGACCAGATCAGCAATTGGTTAAGATTGTACATGATGAACTTGTAAAATTGATGGGCGGAGAGGTTTCTGAACTGGTTTTTGCCAAATCTGGGCCCACTGTCATTTTATTGGCTGGACTCCAGGGAGTTGGGAAGACAACCGTGTGTGCAAAGTTGGCAAATTATCTCAAGAAACAGGGAAAAAGTTGCATGCTAGTTGCTGGGGATGTCTACAGGCCTGCTGCTATTGACCAGCTTTCCATTTTGGGAAAACAGGTGGATGTGCCTGTCTATACAGCAGGTACCGACGTTAAACCTTCAGAAATTGCCAAACAAGGTTTAGAAGAGGCAAAAAGGAAGAAAATTGATGTTGTTATTGTTGATACTGCTGGTAGGCTGCAGATTGACAAGACAATGATGGATGAGTTAAAAGAAGTGAAAAGGGCATTGAATCCTACAGAAGTGTTGCTAGTTGTGGATGCAATGACAGGGCAAGAAGCTGCAGCGTTGGTGACTACTTTCAATCTTGAGATTGGAATAACAGGTGCCATCTTAACAAAGCTTGATGGTGATTCAAGAGGTGGAGCAGCTCTGAGTGTCAAAGAGGGAAATATTGCAGATTTTCTCAAAGATAAACTTGGTGAACCTGTATCTGGAAAGCCAATTAAACTAGTAGGACGGGGGGAACGCATGGAGGATCTTGAACCTTTCTACCCTGATCGGATGGCAGGACGCATACTAGGAATGGGAGATGTTCTTTCTTTTGTGGAGAAGGCACAAGAAGTTATGCGTAAAGAAGATGCTGAAGAACTGCAAAAGAAGATCATGAGTGCAAAATTTGACTTCAACGATTTTCTAAAGCAAACTCGTACTGTTGCCAAAATGGGTTCTGTGTCTCGTGTCATTGGAATGATTCCTGGTATGGGGAAGGTTACTCCGTCTCAAATTAGAGATGCAGAGAAGAATTTGCAGAATATGGAAGTAATGATAGAAGCAATGACCCCTGAGGAGAGGGAAAAGCCAGAACTGTTAGCAGAATCCCCTGTCAGGAGGAAAAGAGTTGCTCAGGATTCAGGGAAAACAGAGCAGCAGGTAAGCCAACTTGTGGCTCAGCTTTTTCAAATGCGTGTTCGTATGAAGAACCTGATGGGTGTAATGGAAAGTGGATCACTTCCAACACTTAGTAATCTTGAGGAAGCGCTTAAAGTAGAGGAAAAGGAGGAGGAAGAGATCGGAATCAAGAAGTGTATTCGTGGACTCAACATCAGGAAGGCCAACTCCTCGTGGTTTTGGGAGCAAAAATTGAAAATCTCTGAAGGGTTCAACGCCAAAGAATTGAAAGCCTGGATCAACGGGTCATTAGTGATAAACTTGCTTGATTTAGCTTTCTTCAGCTAA 1812 0.4487 MDAVACSRHFSTLSLSFSHNRTLRSSSAKSIKLSPPSANASLSSRNWFAKEVWGWVNSNSKGVAVRWDSRGVVVRAEMFGQLTSGLETAWNKLKGEEVLSKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGVIRGVRPDQQLVKIVHDELVKLMGGEVSELVFAKSGPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVAGDVYRPAAIDQLSILGKQVDVPVYTAGTDVKPSEIAKQGLEEAKRKKIDVVIVDTAGRLQIDKTMMDELKEVKRALNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEGNIADFLKDKLGEPVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRKEDAEELQKKIMSAKFDFNDFLKQTRTVAKMGSVSRVIGMIPGMGKVTPSQIRDAEKNLQNMEVMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMESGSLPTLSNLEEALKVEEKEEEEIGIKKCIRGLNIRKANSSWFWEQKLKISEGFNAKELKAWINGSLVINLLDLAFFS 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02720 603 SMART AAA_5 176 323 IPR003593 GO:0016887
Spst1g02720 603 SMART SRP54_N_2 78 163 IPR013822 GO:0005525|GO:0006614
Spst1g02720 603 NCBIfam signal recognition particle protein 80 518 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Spst1g02720 603 Gene3D - 397 521 IPR036891 GO:0006614|GO:0008312|GO:0048500
Spst1g02720 603 FunFam Signal recognition particle 54 kDa subunit 168 375 - -
Spst1g02720 603 Coils Coil 532 552 - -
Spst1g02720 603 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 359 372 IPR000897 GO:0005525|GO:0006614
Spst1g02720 603 Pfam Signal peptide binding domain 417 515 IPR004125 GO:0006614|GO:0008312|GO:0048500
Spst1g02720 603 Pfam SRP54-type protein, helical bundle domain 82 159 IPR013822 GO:0005525|GO:0006614
Spst1g02720 603 Gene3D - 81 396 IPR042101 -
Spst1g02720 603 SMART SRP54_3 177 386 IPR000897 GO:0005525|GO:0006614
Spst1g02720 603 Gene3D - 167 375 IPR027417 -
Spst1g02720 603 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 78 547 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Spst1g02720 603 Pfam SRP54-type protein, GTPase domain 177 386 IPR000897 GO:0005525|GO:0006614
Spst1g02720 603 MobiDBLite consensus disorder prediction 476 496 - -
Spst1g02720 603 SUPERFAMILY Signal peptide-binding domain 417 518 IPR036891 GO:0006614|GO:0008312|GO:0048500
Spst1g02720 603 CDD SRP_G 178 384 - -
Spst1g02720 603 Hamap Signal recognition particle 54 kDa protein [srp54]. 82 536 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Spst1g02720 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 444 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02720 Spst-Chr1 35707138 35713851 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02720 K03106 - gmx:121174134 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02720 1 35707138 35713851 Spst1g02720 1 35707138 35713851 ECH