Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02710 ATGGATTCCATTGAAGTCAATTTCAACATGCAAAGCCATACAGAGGCAAAACAAGGCGTCCACACCTATGTTGCTCAGTGGCCTATTTCCTCTCTAGCATGGTCAATGCGTCGTGACAAAAGCCCTCGCCTTGCCATTGGTAGTTACTTGGAAGATTACACAAACAAGGTTGAACTTGTCCACTTCAACTACGACACCTTCAATTTCACCACCGACCCTCGTTTGGTGTTTGACCACCCTTATGCACCAACAAACATCATGTTCTTTCCCTCCGAGAATGACACCAGTCCAGACCTCATTGCCACCTCAGGGGACAACCTTAGATTATGGGAAATCCATGAAGACCATATTCAACTAAAGTCCCCCTTAATTGGAAACAAAGTTAGTGATCACTCGGCTATTACCTCGTTTGATTGGGCTGTGTTTGACACTCGTCTTATAGCCACTTCTAGTGTAGACACGACATGCACCATCTGGGACATTGAAAGGGAAGTCATGAAGGCACAGCTAGTGGCACATGACAAAGAAGTGTACGACATTTCATGGGGTGGGTTCAATGTCTTTGCTTCCGTGTCAGGTGATGGTTCTGTGAGAGTGTTTGACTTAAGAGACAAGGAGAAATCTACCATAATTTATGAGAATCCTGTACAGGATTGTCCCTTGCTTCGATTGGAATGGAACAAAAGTGATCCAAGGTTTATGGCAACAGTGGGATTGGACAGCAGCAAGGTGGTGATATTAGATATCAGGCTTCCAACCACACCATTTATGGAGTTGGGTAAACATAGAACATGTGTTAATGCCATGTCATGGTCCCCAGATTATGGACGACATTTGTGCTCTGTTAGTGATGATGCAAGGGCCTTCATCTGGGAAGTTATGGACTCAGCAAGGTTTCCATCAAGTAATGGTTGTGATGTGGAGCCTCTGATGTGGTACGGATCATCAGCTGAAATCAACCACGTGCGTTGGTCTCCAATGCAGGTGGATTGGATTGCCCTTACTTTCTTAAACAACTTACAACTACTCAAAGTGTAG 1038 0.447 MDSIEVNFNMQSHTEAKQGVHTYVAQWPISSLAWSMRRDKSPRLAIGSYLEDYTNKVELVHFNYDTFNFTTDPRLVFDHPYAPTNIMFFPSENDTSPDLIATSGDNLRLWEIHEDHIQLKSPLIGNKVSDHSAITSFDWAVFDTRLIATSSVDTTCTIWDIEREVMKAQLVAHDKEVYDISWGGFNVFASVSGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDPRFMATVGLDSSKVVILDIRLPTTPFMELGKHRTCVNAMSWSPDYGRHLCSVSDDARAFIWEVMDSARFPSSNGCDVEPLMWYGSSAEINHVRWSPMQVDWIALTFLNNLQLLKV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02710 345 ProSitePatterns Trp-Asp (WD) repeats signature. 279 293 IPR019775 -
Spst1g02710 345 SMART WD40_4 70 111 IPR001680 GO:0005515
Spst1g02710 345 SMART WD40_4 207 248 IPR001680 GO:0005515
Spst1g02710 345 SMART WD40_4 121 160 IPR001680 GO:0005515
Spst1g02710 345 SMART WD40_4 252 292 IPR001680 GO:0005515
Spst1g02710 345 SMART WD40_4 163 201 IPR001680 GO:0005515
Spst1g02710 345 PANTHER WD REPEAT CONTAINING PROTEIN 10 345 IPR045159 -
Spst1g02710 345 Pfam WD domain, G-beta repeat 129 160 IPR001680 GO:0005515
Spst1g02710 345 Pfam WD domain, G-beta repeat 170 201 IPR001680 GO:0005515
Spst1g02710 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 210 IPR001680 GO:0005515
Spst1g02710 345 SUPERFAMILY WD40 repeat-like 26 333 IPR036322 GO:0005515
Spst1g02710 345 Gene3D - 15 342 IPR015943 GO:0005515
Spst1g02710 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 301 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02710 Spst-Chr1 35577773 35578810 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02710 K11805 - zju:107416321 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02710 1 35577773 35578810 Spst1g02710 1 35577773 35578810 ECH