Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02709 ATGGCCATAGATACAAAGAAAAAGGAAATAAAACTTGAACTTGGTATTTGTATAGAGAAAAAGGGGAGTCCCGGGGTTTGGCACGCATCCAGCTTGGCTTGTTGGACTGAATTACACTCTCTATGCTCTGCTACGCTGTTTCTATTCACTCTGCTCCCTCACCGGAACTCGCAAAACCCTAATCGCTTCCGCGAAACCTTCGCTTCAATCTTCTCGGTTCTCGCTCCCTCCTCTCACTTCCGAACAGTTCCACCGCTTCTTTCTTCGATAGGGTACGTCCTCTCACCTTCCGCTGCAATCCATTTATCGCTGCAATTGCGAATTCCGTTGAGTGCTTCGTCTGTGCAGATGGCAGGGGCGGAGAATAGTGATGGGAGCGAAACTGAACGGGAATTAGCGGGGAATGGCGATAACGGTTTCGTGGAAGATGTGGAGTCTAGTGCCTCTGCTGATTATGAAGGGAATGACAACATTTCTTATGCGAACGTCTTGCGTTCGAGGAACAAATTTGCTGATGCTCTTGCTATCTACGAGCGTGTCTTGGAGAGGGATGGTGCAAATGTGGAGGCGCTCATTGGGAAAGGAATATGCCTTCAGATGCATAATAAGGGAGGGCTTGCGTTTGAGAGTTTTTTTGAGGCTATCAAACTGGATCCTCAAAATGCGTGTGCTCTCACGCATTGCGGCATTTTGCACAAGGACGAAGGTCGCCTAGTGGAGGCTGCTGAGGGCGGTTTAATGTATGGCGATGTGGGATTTCCATCGTGGCCAGATGTCCCAGAATGGTGTTACAGATTAGTGGTGGCAGAAATTGTGCCCCAGTCCCACACCGCAGCCCTGTGCCTCCTTAGAATGGAAGAAGTAGAAATTGTGGTTCAGGGCATCCAGACCAAGATGAAGGGCAAAAGAAACCCTAATTTTCTTAAAACTGATTCATATCAGAAGGCTTTACGAGTGGATCCTTCATACATAGCAGCTGCTGAATGCCTTGCCATTGTTTTAACAGATATTGGTACCAACACAAAGCTAGCTGGAAACACTCAGGATGGAGTTCAAAAATATTTTGAAGCCCTCAAAGTAGATCCACACTATGCTCCTGCATACTATAATCTTGGTGTGGTCTATTCAGAAATGATGCAATATGACATGGCCCTCACATTCTATGAAAAAGCTGCATCAGAGAGGCCAACTTATGCTGAAGCATATTGCAATATGGGTGTTATTTTTAAAAATCGTGGTGATTTGGATTCAGCTATTTCTTGTTATGATAGGTGTTTATCTGTTTCACCTAACTTTGAGATTGCAAAGAATAATATGGCTATAGCTTTGACGGATTTAGGAACGAAGGTTAAATTGGAGGGGGACATCAACCAAGGTGTGGCTTTGTATAAGAAAGCTCTATATTACAACTGGCATTATGCTGATGCCATGTATAATCTTGGGGTTGCTTATGGTGAGATGCTTAAGTTTGATATGGCCATTGTATTCTATGAACTCGCCTTTCATTTCAATCCACTTTGTGCGGAAGCATGTAACAATCTTGGTGTTATATATAAAGATCGTGAAAACCTTGATAAAGCTGTAGAATGCTACCAGCTTGCTTTGTTAATCAAACCTAATTTTTCACAGTCGTTAAATAACCTTGGTGTTGTATACACTGTCCAGGTTGAGTATGGTACAATTCCTGAATTTTTGAGTTGTCAAATATCTTCGGTAAGTGATAATCTTTTCTTCCTTCTTCAGGGTAAAGTGGATGCTGCTGCAAGAATGATTGAGAAAGCTATCACTGCAAATCCGACATATGCAGAAGCATACAATAACCTAGGAGTTCTTTATAGAGATGCTGGTGATATAGCTCGAGCAATTGATGCCTATGAGCAGTGTCTTAAGATTGATCCTGATTCTCGAAATGCTGGCCAGAGTGAGCTTCTAGTTTGGGATATTGGTTGTAAAAACCGCTTACTTGCAATGAATTACGTAGATGAAGGAATTGATGACACACTTTTTGAGGTTCACAGGAGTTGGGGTAGACGATTCATGAAACTATATCCACAGTACACATCGTGGGGCAACTCAAAAGATCCTGAACGGCCCCTTGTGATAGGCTATGTTTCGCCTGATTATTTTACCCATTCTGTGTCATATTTCATAGAAGCGCCTCTTGTCTATCATGACTACTCCAATTTCAAAGTGATTGTTTATTCTGCAGTTGTCAAGGCAGATGTTAAAACCATTAGATTTAGAGAAAAAGTTACAAAGAAGGGTGGTATCTGGAAAGATATTTATGGAATTGATGAAAAGAAAGTTGCCAACATGGTTAGAGAAGATGAAGTTGATATTTTGGTAGAACTTACAGGTCATACCGCGAACAATAAATTGGGGATGATGGCATGTCGGCCTGCACCAATTCAGGTGACTTGGATTGGTTATCCCAATACAACAGGATTGCCTACAATTGATTATAGAATCACTGATTCTTTGGCAGACCCTCCTGAAACAAAGCAGAAACATGTCGAGGAGTTGGTTAGATTGCCAGAATGTTTCCTTTGTTACACCCCTTCCCCTGAGGCTGGTCCTGTCTGTGCAACTCCAGCGCTTTCCAATGGCTTCATCACATTTGGCAGTTTCAACAATCTTGCCAAGGTTGCAATTATGTTGAAGCATATTACACCAAAGGTATTGCAGGTTTGGGCAAGGATACTGTGTGCAATTCCGAATTCCCGCCTTGTGGTAAAATGCAAACCATTTTGCTGTGATAGTGTGCGACAGAGATTCCTTTCAACACTAGAGCAGTTAGGCTTAGAACCGCTACGTGTTGATCTTCTGCCCCTTATTCTTCTTAACCATGATCATATGCAGGCCTATTCTCTTATGGACATCAGTTTGGATACATTTCCATATGCTGGAACAACAACTACTTGTGAATCTTTATATATGGGAGTTCCATGTGTCACTATGGCTGGTTCAGTACATGCACACAATGTTGGTGTTAGTCTTCTAACCAAAGTTGGGATGGAGCATTTGATTGCCAGAAATGAAGATGAATACGTTGAATTGGCTCAGAAGTTGGCTTCTGACATTTCCGCACTACATAATTTGAGAATGAGTCTGCGAGATCTCATGTCCAAGTCCCCTCTCTGTGATGGTGCAAAATTTATCTTAGGTTTAGAGTCAACTTACAGAAATATGTGGCACAGGTATTGTAGAGGAGATGTGCCATCTTTGAAACGCATGGAATTGTCAGAAGAAGTTGCTATGGGTGACCGGTCAAGTAAGAATTCTGAACCAACAAGAACTACAAACTCAAGGGAGGGCAGTCCTGGGTATGTCAGGGCCAATGGATTTAACACAATGCCCGTGTCAAAGCTTAACATAAACAATTTCGAAGAAAACGGTGGGTCATCAAATCCTCGTAGTAAACAAGGGAAGCCGAGTTAA 3438 0.4252 MAIDTKKKEIKLELGICIEKKGSPGVWHASSLACWTELHSLCSATLFLFTLLPHRNSQNPNRFRETFASIFSVLAPSSHFRTVPPLLSSIGYVLSPSAAIHLSLQLRIPLSASSVQMAGAENSDGSETERELAGNGDNGFVEDVESSASADYEGNDNISYANVLRSRNKFADALAIYERVLERDGANVEALIGKGICLQMHNKGGLAFESFFEAIKLDPQNACALTHCGILHKDEGRLVEAAEGGLMYGDVGFPSWPDVPEWCYRLVVAEIVPQSHTAALCLLRMEEVEIVVQGIQTKMKGKRNPNFLKTDSYQKALRVDPSYIAAAECLAIVLTDIGTNTKLAGNTQDGVQKYFEALKVDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAASERPTYAEAYCNMGVIFKNRGDLDSAISCYDRCLSVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVALYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPLCAEACNNLGVIYKDRENLDKAVECYQLALLIKPNFSQSLNNLGVVYTVQVEYGTIPEFLSCQISSVSDNLFFLLQGKVDAAARMIEKAITANPTYAEAYNNLGVLYRDAGDIARAIDAYEQCLKIDPDSRNAGQSELLVWDIGCKNRLLAMNYVDEGIDDTLFEVHRSWGRRFMKLYPQYTSWGNSKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYSNFKVIVYSAVVKADVKTIRFREKVTKKGGIWKDIYGIDEKKVANMVREDEVDILVELTGHTANNKLGMMACRPAPIQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELVRLPECFLCYTPSPEAGPVCATPALSNGFITFGSFNNLAKVAIMLKHITPKVLQVWARILCAIPNSRLVVKCKPFCCDSVRQRFLSTLEQLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGMEHLIARNEDEYVELAQKLASDISALHNLRMSLRDLMSKSPLCDGAKFILGLESTYRNMWHRYCRGDVPSLKRMELSEEVAMGDRSSKNSEPTRTTNSREGSPGYVRANGFNTMPVSKLNINNFEENGGSSNPRSKQGKPS 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02709 1145 Gene3D Tetratricopeptide repeat domain 576 653 IPR011990 GO:0005515
Spst1g02709 1145 ProSiteProfiles TPR repeat profile. 474 507 IPR019734 GO:0005515
Spst1g02709 1145 Pfam Tetratricopeptide repeat 161 221 - -
Spst1g02709 1145 Gene3D Tetratricopeptide repeat domain 449 560 IPR011990 GO:0005515
Spst1g02709 1145 Gene3D Tetratricopeptide repeat domain 310 448 IPR011990 GO:0005515
Spst1g02709 1145 ProSiteProfiles TPR repeat profile. 399 432 IPR019734 GO:0005515
Spst1g02709 1145 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Spst1g02709 1145 MobiDBLite consensus disorder prediction 1117 1145 - -
Spst1g02709 1145 ProSiteProfiles TPR repeat profile. 508 541 IPR019734 GO:0005515
Spst1g02709 1145 SUPERFAMILY TPR-like 447 637 IPR011990 GO:0005515
Spst1g02709 1145 SUPERFAMILY TPR-like 310 449 IPR011990 GO:0005515
Spst1g02709 1145 Pfam Tetratricopeptide repeat 399 432 IPR001440 GO:0005515
Spst1g02709 1145 Pfam Tetratricopeptide repeat 365 398 IPR001440 GO:0005515
Spst1g02709 1145 Pfam Tetratricopeptide repeat 508 541 IPR001440 GO:0005515
Spst1g02709 1145 Pfam Tetratricopeptide repeat 602 634 IPR001440 GO:0005515
Spst1g02709 1145 MobiDBLite consensus disorder prediction 1082 1145 - -
Spst1g02709 1145 ProSiteProfiles TPR repeat profile. 365 398 IPR019734 GO:0005515
Spst1g02709 1145 SUPERFAMILY TPR-like 159 338 IPR011990 GO:0005515
Spst1g02709 1145 Gene3D - 683 861 - -
Spst1g02709 1145 ProSiteProfiles TPR repeat region circular profile. 365 396 - -
Spst1g02709 1145 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 578 1086 - -
Spst1g02709 1145 SUPERFAMILY TPR-like 580 1019 IPR011990 GO:0005515
Spst1g02709 1145 Gene3D Tetratricopeptide repeat domain 144 244 IPR011990 GO:0005515
Spst1g02709 1145 Gene3D Glycogen Phosphorylase B; 863 1045 - -
Spst1g02709 1145 MobiDBLite consensus disorder prediction 1090 1107 - -
Spst1g02709 1145 ProSiteProfiles TPR repeat region circular profile. 399 431 - -
Spst1g02709 1145 SMART sel1 602 633 IPR006597 -
Spst1g02709 1145 SMART sel1 508 539 IPR006597 -
Spst1g02709 1145 SMART sel1 365 396 IPR006597 -
Spst1g02709 1145 SMART sel1 474 505 IPR006597 -
Spst1g02709 1145 SMART tpr_5 399 432 IPR019734 GO:0005515
Spst1g02709 1145 SMART tpr_5 365 398 IPR019734 GO:0005515
Spst1g02709 1145 SMART tpr_5 440 473 IPR019734 GO:0005515
Spst1g02709 1145 SMART tpr_5 154 187 IPR019734 GO:0005515
Spst1g02709 1145 SMART tpr_5 331 364 IPR019734 GO:0005515
Spst1g02709 1145 SMART tpr_5 602 635 IPR019734 GO:0005515
Spst1g02709 1145 SMART tpr_5 474 507 IPR019734 GO:0005515
Spst1g02709 1145 SMART tpr_5 508 541 IPR019734 GO:0005515
Spst1g02709 1145 SMART tpr_5 188 221 IPR019734 GO:0005515
Spst1g02709 1145 Pfam Glycosyl transferase family 41 867 1052 IPR029489 -
Spst1g02709 1145 Pfam Glycosyl transferase family 41 692 849 IPR029489 -
Spst1g02709 1145 ProSiteProfiles TPR repeat profile. 602 635 IPR019734 GO:0005515
Spst1g02709 1145 ProSiteProfiles TPR repeat region circular profile. 602 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02709 Spst-Chr1 35549710 35571500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02709 349 547 Glycosyltransferase AT3G11540 32.161 6.55e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02709 K09667 - gmx:100776844 1501.49