Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02696 ATGGAAGGGTGTTCCTCCTCAGACGCTCCACTCCTCAAGAGGTTAGAAGGGAAGGTGGCCCTAATAACCGGTGGAGCCAGTGGCATAGGCGAAGCCACTGCCAAGCTTTTCCTACGCCACGGTGCCAAGGTCCTCATCGCCGACATCCAAGACAACCTCGGACACTCCCTTTGCCACAGCCTTAACTCCAACAACATTTCCTATGTTCATTGTGACGTCACTAACCTTAGCGACGTCCAGGCCGCTGTCAACGCTTCCGTCACAAGGTACGGAAAGCTGGACATCCTGTTCAGTAACGCCGGCATCGGTGGCCGTTTGGAATCTTCCATCATGGCCCTCGATCCCGCTGACCTAAAGAGGGTTTTCGAGGTCAACGTTTTTGGCGCTTTCTACACCGCTAAACACGCCGCCGAGGTGATGGTTCCCAGAAAAAGAGGGAGCATTGTGTTCACCTGTAGCGCTGTTTCGGTGACTCACGCGGGTTCGCCACACGCGTACACGGCGTCGAAGCACGCGGTGGTGGGTCTGATGAAGAACCTGTGCGTGGAACTGGGGAAGCATGGAATCAGAGTGAATTGCGTTTCGCCGTACGCAGTAGCGACTCCTCTGATGAGACGTGAAATGGGGATGGAGAAGGAGTTGATAGAGGAAGTGTTTTCGGAGGCGGGAAACTTGAATGGGGTGGTTCTGAAGGAAGAGGATGTGGCTGAAGCAGCTTTGTTTCTTGCTAGTGATGAATCGAAATACGTGAGTGGGGTGAATCTAGTTGTGGATGGAGGTTACAGTGTTAACAATGTTGCCTCTGGCGAAATAGCTTTAAGAAAGTTTTCTGCTAATTAA 840 0.5238 MEGCSSSDAPLLKRLEGKVALITGGASGIGEATAKLFLRHGAKVLIADIQDNLGHSLCHSLNSNNISYVHCDVTNLSDVQAAVNASVTRYGKLDILFSNAGIGGRLESSIMALDPADLKRVFEVNVFGAFYTAKHAAEVMVPRKRGSIVFTCSAVSVTHAGSPHAYTASKHAVVGLMKNLCVELGKHGIRVNCVSPYAVATPLMRREMGMEKELIEEVFSEAGNLNGVVLKEEDVAEAALFLASDESKYVSGVNLVVDGGYSVNNVASGEIALRKFSAN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02696 279 Gene3D - 6 274 - -
Spst1g02696 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Spst1g02696 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 IPR002347 -
Spst1g02696 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 IPR002347 -
Spst1g02696 279 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Spst1g02696 279 PRINTS Glucose/ribitol dehydrogenase family signature 225 245 IPR002347 -
Spst1g02696 279 PRINTS Glucose/ribitol dehydrogenase family signature 166 185 IPR002347 -
Spst1g02696 279 PRINTS Glucose/ribitol dehydrogenase family signature 187 204 IPR002347 -
Spst1g02696 279 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Spst1g02696 279 PRINTS Glucose/ribitol dehydrogenase family signature 140 156 IPR002347 -
Spst1g02696 279 Pfam Enoyl-(Acyl carrier protein) reductase 24 262 - -
Spst1g02696 279 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 13 265 - -
Spst1g02696 279 FunFam Short-chain dehydrogenase reductase 5 267 - -
Spst1g02696 279 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 263 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02696 Spst-Chr1 35419477 35420430 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02696 15 266 Acyl Lipid Metabolism Gene Families AT3G55290 30.597 1.41e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02696 - - gmx:100803447 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02696 1 35419477 35420430 Spst1g02696 1 35419477 35420430 ECH