Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02643 ATGACCCGTTTTTCCGAGAGGCTCCGGTTGTGCTCGTTGTTTCCGAAACCGACCCGTTTTCTCGCTCTTGTTTCTCTCTCCACTCTCCATCATCTCTGCAAGTCCCTCGCTCGCTTCTTACTCTCCCAAACCCTACCCTTCCTAGCCATGGACAACTTCTTCTCCGACTACCTCTCCGACGACTTCGATTCCTCCCCCCACCGTCCCCACCGCCGTTACCTTCAAGACCACGACCTCGATTTCGCCAACGAGAGGGTCTACCTCCTCCCCTACAGGTGGTTGGTGGAAGCGGAAGGTGAAGCTGATCGAGGGGAGGGTGTGCTTTATACGGTGACATGTAATTCCGATTCCGACTCCGAGATTTTGCTTCATCTGACAAAGGAAGAGGAGCGCCACAAGGTTGGGATTTCTGGCCGTCACTTTGCGTTGGTTCCCGAGGGAGTTTGGTTGCGAACACTCAAACGGTATAATGATTTGAATAATGCAGTGAAAGATGTTGGAAGCCTGTCCAATGTGGAGGACTGTTTGCCAGAATTGTTCCCCTTGCAAGTTAAGATATTTGTTTCATGGGAAACCAGCTCACTGGTTGCAAAGATAAGCCAAAAGGAAAATGTGGCTGACTTCTATGAGAAAGCTTGTGACATTTTCAATCCTGCATATAACCCTGTGCATATTTGGGACTTTTCAGGGCAGACATCACAGTTTTTCTTGAATGACAAATCAAGGTTGCCAAATGATTCTTCTGGTCATTCTGGAAAAGAGGTTGCTCTGGAGTTACAAGTACATGGACTTCCAGATTCTATGAGGGGTAATGGGGAAAATGAGATGATTTTAGATAGGGCTCAGATGGAATGTTCACACAGTGGTTCAGCTATAATGAATGGAAGCACTGACAATGTGACATCCTGCATAACAGCCAATGATTTTCGAGGCAGTAGTTGTAGAGCAATTCGATCTTTGGGCTTGACAGGATTACAGAATCTTGGAAATACTTGTTTTATGAATAGTGCCATTCAGTGTTTGGCTCACACCCCAAAGCTTGTTGATTTTTTCCTTGGAGATTACCGGAAAGAGATTAATTATGAAAATCCGTTGGGAATGAATGGAGAACTTGCTCTAGCTTTTGGAGACTTGCTTAGAAAGCTGTGGGTTCCTGGAGCTACGCCCATTGCACCGAAAACGTTCAAGATGAAGCTGGCTAATTTTGCTCCTCAGTTTAGTGGTTATAGCCAGCATGACTCTCAAGAACTTCTCGCTTTTTTGTTGGATGGATTGCATGAAGACCTTAATCGTGTAAAACGCAAACCATATCATGAAGTTAAGGATGCAGATGGTCGTCCAGATGAAGAAGTGGCAGAAGAGTATTGGCGAAATCACCTTGCTCGCAATGACTCCATAGTAGTTGATTTGTGCCAAGGTCAGTTTCGGTCAACACTAGTTTGCCCTATTTGCAAGAAGGTTTCTATCACATTTGACCCTTTTATGTATCTATCTCTGCCTCTACCTTCTACAACAATACGAACCATGACTTTGACGGTCATAGGCACTGACGGGATTACATTGCCTTCTACACTTACGGTAACAGTGCCTGAATGTGGAACACTGAAGGATCTCATTGGGGCATTAAGTGCTTCTTGTTCTCTGAGAGATGATGAAACCCTCTTGGTCGCCGAGATATATAAGAATAACATTTTTCGGGTATACGAGGATCCATCTGATTCATTAGTTGATATTAGAGATCAAGACAAAGTTGTTGCTTATCGAATGCAAAAGGAAATTGAAGCTACTCCCTTGGTTGTTTTTGTCCATGAACGTTTGGTGGAAGGGTTGTTTGGTATTCCCCTTGTTACAAGGTTGTCCAATATTTCTTGTGGATATGATGTTCAAAGGGAGTTTCTGAAGTTAATCAATCCATTTATGATGCGCACTAAAGATGAATTAGATGATTATGATAAGAATGGTGGTATTAATAAAAGACCAAGTGAAGATGATGAATTGGGGGATACTTCTAACTCTTCCATATTAGGAAATGATGCGAACTCAAACATTAGAACAGATGATGGCATAAATTTGTCAACTGACTTTGAATTCTACTTACATGGAATGGAGAAGGTCAAGATAATATTGGACAAACAACCATTAACAATCACAGCATTGCCCAGAAAGTTGCCTGAGGTAGATGTCTTGTGGCCGGATAAGATGCTTAAAATGTATAATACATATCTACTTGATTCATTGCCCGAGGTTTTCAAGCCCCAGCTATTTGCCAAGAGAATGCAAGAATCAGTTTCTATTTACAAGTGCCTTGAAGCCTTCTTGAAAGTGGAACCTCTTGGGCCAGAAGACATGTGGTACTGTCCTACCTGCAAAGAACCTCAGCAAGCAACTAAAAAACTAGATCTTTGGAGATTGCCTGAGATCCTTGTTGTTCATTTGAAGAGGTTCTCATACAGCCGATACTTCAAGAACAAGCTGGAAACATTGGTTGATTTCCCAATTAATAATCTGGACCTGTCAACTTATGTAGTTTACGGAAATAGTCAGTCTACCAACCGCTATATGTTGTATGCAATTAGTTGTCATTATGGAGGGTTAGGAGGAGGTCACTATACAGCATTTGTCCGATATGGCGATGATAAATGGTATGATTTTGATGACAGCAGAGTCGAACCTGTTAACGAGGACATGATAAAGACTCCTGCTGCTTATGTTCTTTTCTACAGGAAAGTTTAG 2733 0.4255 MTRFSERLRLCSLFPKPTRFLALVSLSTLHHLCKSLARFLLSQTLPFLAMDNFFSDYLSDDFDSSPHRPHRRYLQDHDLDFANERVYLLPYRWLVEAEGEADRGEGVLYTVTCNSDSDSEILLHLTKEEERHKVGISGRHFALVPEGVWLRTLKRYNDLNNAVKDVGSLSNVEDCLPELFPLQVKIFVSWETSSLVAKISQKENVADFYEKACDIFNPAYNPVHIWDFSGQTSQFFLNDKSRLPNDSSGHSGKEVALELQVHGLPDSMRGNGENEMILDRAQMECSHSGSAIMNGSTDNVTSCITANDFRGSSCRAIRSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYRKEINYENPLGMNGELALAFGDLLRKLWVPGATPIAPKTFKMKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIVVDLCQGQFRSTLVCPICKKVSITFDPFMYLSLPLPSTTIRTMTLTVIGTDGITLPSTLTVTVPECGTLKDLIGALSASCSLRDDETLLVAEIYKNNIFRVYEDPSDSLVDIRDQDKVVAYRMQKEIEATPLVVFVHERLVEGLFGIPLVTRLSNISCGYDVQREFLKLINPFMMRTKDELDDYDKNGGINKRPSEDDELGDTSNSSILGNDANSNIRTDDGINLSTDFEFYLHGMEKVKIILDKQPLTITALPRKLPEVDVLWPDKMLKMYNTYLLDSLPEVFKPQLFAKRMQESVSIYKCLEAFLKVEPLGPEDMWYCPTCKEPQQATKKLDLWRLPEILVVHLKRFSYSRYFKNKLETLVDFPINNLDLSTYVVYGNSQSTNRYMLYAISCHYGGLGGGHYTAFVRYGDDKWYDFDDSRVEPVNEDMIKTPAAYVLFYRKV 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02643 910 MobiDBLite consensus disorder prediction 650 666 - -
Spst1g02643 910 Pfam Ubiquitin carboxyl-terminal hydrolase 323 907 IPR001394 GO:0004843|GO:0016579
Spst1g02643 910 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 323 910 IPR028889 -
Spst1g02643 910 CDD Peptidase_C19R 737 908 - -
Spst1g02643 910 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 324 339 IPR018200 GO:0004843|GO:0006511
Spst1g02643 910 Gene3D Cysteine proteinases 603 910 - -
Spst1g02643 910 Gene3D Cysteine proteinases 311 602 - -
Spst1g02643 910 MobiDBLite consensus disorder prediction 650 679 - -
Spst1g02643 910 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 853 870 IPR018200 GO:0004843|GO:0006511
Spst1g02643 910 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 261 909 - -
Spst1g02643 910 SUPERFAMILY Cysteine proteinases 321 909 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02643 Spst-Chr1 34831553 34838894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02643 761 910 Miscellaneous Gene Families AT2G24640 33.333 2.70e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02643 - K21343 gmx:100791802 1526.92