Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02631 ATGCTGGCGTATCGTCCCAAGTTTACCCCCATTGCAAAACGACGTGAATTAGAGGTGAAGGGTAGTTTCGTCATACCACTTTCAACGGATACTTTCCCTATAAAAGGAAACCCTGGGCTTCTAACCATGGACGCGGGACTGTGGAATTCTTCTTCCTCCAAGATCAACTCCAGATCCCCCTTCCAGGGTCGCCTCTTCCGAACTAAGAATTCTCAAGAAAATTTGGACAGGTTTATTCCTAATCGCTCTGCGATGGACTTCGGCTACGCGCACTATATGCTCACGGAGGGCAACAAGAAGGGCAGGGAGAAGGAAAACGACGTGGTGACGTCACCATCTCAACAAGCATACCAGAAGCAACTCGCGGAGGCTTTCAACATGAATCGGACTCGAATCTTGGCTTTCAAGAACAAACCCCCAACGCCTGTTGAACTCATTCCCAAGTGCGTCCTTTCGCCTCCTCCTCCACCCAAATCCTCTAAGCCCAGACGTTACATTCCTCAGAGTTCTGAGAGGACGTTGGATGCTCCTGATATACTGGATGACTTTTATTTGAACCTGTTGGATTGGGGTAGTGGCAATATTCTTAGTCTTGCTCTTGGGAACTCGGTGTATCTATGGAATGCCGATGACACCTCCACCTCCGAACTTGTCACTGTGGATGAGGAAGATGGTCCTGTTACAAGTGTGTCCTGGGCTCCGGATGGGCGCCATTTAGCCATTGGGTTGAACAATTCTCATGTCCAGCTCTGGGATTCTCATTCTTCTAGGATGATAAGAACACTAAGAGGTGGACATCAAGCACGAGTGGGTTCACTGTCTTGGAACAATCATATTCTCACAACAGGAGGGATGGATGGTAGAATCGTTAACAACGATGTTAGAGTGCGGTCTCATATTGTTGAATCTTATAGAGGACATCAGCAGGAGGTCTGTGGTCTTAAGTGGTCTCCCTCAGGACAACAATTGGCGAGTGGGGGAAACGATAATGTTATTCACATATGGGACAGGGCTACTGTCTCTTCAAATTCTGCTACCCGTTGGCTTCACAGATTTGAGGAGCATAGAGCTGCTGTGAAGGCACTAGCTTGGTGTCCATTCCAGGCAAATCTGCTAGCTTCTGGTGGAGGTGGTGGTGATCACTGCATTAAGTTCTGGAACACCCATACAGGGGTGTGCTTGAACTCTGTCAACACAGGTTCACAAGTGTGCGCTCTTCTCTGGAGCAAGAACGAGCGTGAGTTGCTTAGCTCGCATGGTTTCACCCAGAACCAGCTAACTCTTTGGCAATATCCTTCCATGCTTAAGATGGGGGAGCTCAAGGGTCATACTTCCAGGGTGTTGTTTATGACGCAAAGTCCAGATGGGTGTACTGTGGCCTCTGCAGCAGGGGACGAGACTCTGAAATTTTGGAATGTTTTTGGAACTCCCCAGGCTTCCAAACCGGCGCCGAAAGCTAGTACTGAGCCCTTTGCTCATGTGAGTCGTATTCGTTGA 1497 0.4876 MLAYRPKFTPIAKRRELEVKGSFVIPLSTDTFPIKGNPGLLTMDAGLWNSSSSKINSRSPFQGRLFRTKNSQENLDRFIPNRSAMDFGYAHYMLTEGNKKGREKENDVVTSPSQQAYQKQLAEAFNMNRTRILAFKNKPPTPVELIPKCVLSPPPPPKSSKPRRYIPQSSERTLDAPDILDDFYLNLLDWGSGNILSLALGNSVYLWNADDTSTSELVTVDEEDGPVTSVSWAPDGRHLAIGLNNSHVQLWDSHSSRMIRTLRGGHQARVGSLSWNNHILTTGGMDGRIVNNDVRVRSHIVESYRGHQQEVCGLKWSPSGQQLASGGNDNVIHIWDRATVSSNSATRWLHRFEEHRAAVKALAWCPFQANLLASGGGGGDHCIKFWNTHTGVCLNSVNTGSQVCALLWSKNERELLSSHGFTQNQLTLWQYPSMLKMGELKGHTSRVLFMTQSPDGCTVASAAGDETLKFWNVFGTPQASKPAPKASTEPFAHVSRIR 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02631 498 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 261 IPR001680 GO:0005515
Spst1g02631 498 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 440 473 - -
Spst1g02631 498 SMART WD40_4 345 387 IPR001680 GO:0005515
Spst1g02631 498 SMART WD40_4 213 252 IPR001680 GO:0005515
Spst1g02631 498 SMART WD40_4 433 472 IPR001680 GO:0005515
Spst1g02631 498 SMART WD40_4 390 430 IPR001680 GO:0005515
Spst1g02631 498 SMART WD40_4 255 293 IPR001680 GO:0005515
Spst1g02631 498 SMART WD40_4 297 336 IPR001680 GO:0005515
Spst1g02631 498 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 304 336 - -
Spst1g02631 498 Pfam Anaphase-promoting complex subunit 4 WD40 domain 219 277 IPR024977 -
Spst1g02631 498 MobiDBLite consensus disorder prediction 478 498 - -
Spst1g02631 498 CDD WD40 192 472 - -
Spst1g02631 498 Pfam WD domain, G-beta repeat 437 472 IPR001680 GO:0005515
Spst1g02631 498 Pfam WD domain, G-beta repeat 302 336 IPR001680 GO:0005515
Spst1g02631 498 Pfam WD domain, G-beta repeat 349 387 IPR001680 GO:0005515
Spst1g02631 498 ProSitePatterns Trp-Asp (WD) repeats signature. 459 473 IPR019775 -
Spst1g02631 498 MobiDBLite consensus disorder prediction 148 162 - -
Spst1g02631 498 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 252 - -
Spst1g02631 498 Gene3D - 128 475 IPR015943 GO:0005515
Spst1g02631 498 ProSiteProfiles Trp-Asp (WD) repeats profile. 440 473 IPR001680 GO:0005515
Spst1g02631 498 MobiDBLite consensus disorder prediction 148 169 - -
Spst1g02631 498 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 336 IPR001680 GO:0005515
Spst1g02631 498 SUPERFAMILY WD40 repeat-like 186 472 IPR036322 GO:0005515
Spst1g02631 498 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 62 492 IPR033010 GO:0010997|GO:0097027|GO:1904668
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02631 Spst-Chr1 34748665 34750922 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02631 265 473 Miscellaneous Gene Families AT5G08390 22.535 4.32e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02631 K03363 - gmx:100801495 824.698