Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02621 ATGCTCTCGAGAAAACCTCCACCGTTTATCTCGCCTTTAGTACCCTCTTCTCTGTTCAAACAGCTGTCCCAGGATTTGGAAGTGGGAAAAGGGAGAATGAAGTTCGGGTGTGCATTCAGAGAGTACCTGCAGGAGGAGCGGGAGTGGTTTCTGGACGAGAAATGTGCTCACGTTGAATATATCAGGTTGAAGAAAGTGTTGAAGACTTGCAAGAAAGGCACCTCTTCCGATAAGGACCGGTTGTGTCAGTGTCAGTCTTGCCCATTATGTGATCAAAAGTTCTTCTCTGAGTTGATGAAGGAAGCGTCAGATGTGGTAGGATACTTTAGTTCAAGAGTTAAGCATCTCCTTCATCTTCACATTTCAACAGGACTGCATAGATATGTATTGCGTTTGCGCGAGTGCTTTAAAAGTGATAGGCAAACCCTTAATCAAGAAGGGAGGATTCTAATTGAGTACATTGCAATGAATGCTATTGCAATGAGGAAGATACTTAAGAAATATGATAAAGTACACAGCTCTGTGAATGGGGAGAACTTCAAATCTAGGATGCACGCTGAACACATTGAACTTTTGCACTCTCCTTGGATAATTGAATTGGGTGCTTTTTATCTGAATTCTAGTGGACAAGATAGTTGTGAGCTTGATGGAGTCTATGGTCGCTTTTCGTGTGATCTAAACATAAATAAAGATGTATTGACATTGATTCTTCCCGATTCTATCAAGCTTGAGTATAATCTAACTTGTGCAATTTGCCTGGATTTTGTTTTCAACCCTTATGCTTTGAGCTGTGGTCATATCTTCTGCAAGTCATGTGCTTGCTCAGCTGCCTCTGTGATGATTTTTCAAGGACTCAAAGCTGCTAGTCCAGAGTCCAAGTGTCCTATATGCAGAGAGGTTGGAGTTTATTCTAAGGCTGTGCGCATGCTAGAACTTGATCTACTTATGAAAAGAAGGTGCAAAGATTACTGGAGAGAGAGGCTAGCTAGTGAAAGAGTTGATACATTGAAGCAATCCAAGGAATACTGGAATTCACAGTCCACATATGCAGTTGGATTGCTGTAG 1065 0.4169 MLSRKPPPFISPLVPSSLFKQLSQDLEVGKGRMKFGCAFREYLQEEREWFLDEKCAHVEYIRLKKVLKTCKKGTSSDKDRLCQCQSCPLCDQKFFSELMKEASDVVGYFSSRVKHLLHLHISTGLHRYVLRLRECFKSDRQTLNQEGRILIEYIAMNAIAMRKILKKYDKVHSSVNGENFKSRMHAEHIELLHSPWIIELGAFYLNSSGQDSCELDGVYGRFSCDLNINKDVLTLILPDSIKLEYNLTCAICLDFVFNPYALSCGHIFCKSCACSAASVMIFQGLKAASPESKCPICREVGVYSKAVRMLELDLLMKRRCKDYWRERLASERVDTLKQSKEYWNSQSTYAVGLL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02621 354 CDD RING-HC_BAH1-like 239 312 - -
Spst1g02621 354 ProSiteProfiles SPX domain profile. 33 182 IPR004331 -
Spst1g02621 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 33 352 IPR033326 -
Spst1g02621 354 SUPERFAMILY RING/U-box 241 300 - -
Spst1g02621 354 SMART ring_2 249 297 IPR001841 -
Spst1g02621 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 349 IPR013083 -
Spst1g02621 354 ProSitePatterns Zinc finger RING-type signature. 264 273 IPR017907 -
Spst1g02621 354 Pfam RING-type zinc-finger 249 295 IPR027370 -
Spst1g02621 354 ProSiteProfiles Zinc finger RING-type profile. 249 298 IPR001841 -
Spst1g02621 354 CDD SPX_BAH1-like 34 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02621 Spst-Chr1 34671789 34674619 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02621 K16275 - gmx:100781704 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02621 1 34671789 34674619 Spst1g02621 1 34671789 34674619 ECH