Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02617 ATGGAACGTCAGGGTCATGATTATGCAGCTGCATCTGCTATGGCGTATGCTCAGCAACAGAGGCAAGCTGCTAATATGCAACAACAACAACAGCAGTTTGGATTTCATCCCCAGCATCAGCAGTTTCCTTCATCAATTCACGGCCCTCCTTTTATTCCCTCAGGTCCTGGTCCTGCACACCCACCTATGCAACAATTCCCGTATCATCATGCCTTGCAGCAGCAGCAGCCACTTCCACAATTACATCCTCATGCCCCTCCCCCGCCTCATCTTCTTCTTCAGCAGCAGCACCAAGGACCACCTGCATTTCCTTCACATTATCCTCCTCCTCTTGTTCCATCTCCGTTTTATGATTCTGCCCCACCCCCAGTTGCCCCTCCTTCTGATCCCGACCTCCACAAGCGAATTGACAAGCTTGTTGAGTATGCAGTGAAAAACGGCCCTGATTTTGAAGCTATGATATGTGAAAAGCAACGTGATAATCCTTCCTATAGTTTCCTCTTTGGTGGGGAAGGCCATGGTTACTATCGTTATAAGCTTTGGTTATCTACTCGTCCCCCGGGTGGTCCATTCAACCCACCTTTTCCAACATCTTCCATGCCCATGATCCATCCCCCTCCGAATCCATTGATGAATCCATCTCCTCTAAATGCTTCTCCAATGAATCCTGCAGGAATAGGGTCTTCACCTTCAATGCTAGGTCCACCCCCTTTCCAACAGTTCTATGATCAACAACACCACCATCAACATCCTCAATCTTTTGGGCTTTCTGGTCGGCCTGAGTATGATCAGTCATCCAAGTCTTTCAAAGGACCCTCTGGGCCACTTCCATCTGATGTCGCAATGGAGCTCAGTAATGTTCTGAACAATCTGAATGGTACAAAAGAATCCATCAAAGGTGCAAAACTTTGGTTCATGCAGAGATCTCCATTTGCACCGGCCCTAGCAGAGGCTCTTAGAGATAGGGTCTTTGCGTTGGATGAAGTTGAGAGACAGTTACATATAATATACCTTGCCAATGACATCCTTTTTGACAGTTTGAACAGGAGAACAAACGGCAATGACCTTGACAGTGAAGCTCTTGCCTTGAAACCTGTTTTAGGCTCTATGCTTGCAAGAATTTATCATAACCCACAAAGCAATGAGGAGTACAGAAAAAGATTGCAGCAAATGGTGGAGTTCTGGGCCTCTAAAAAGGTATACGATCAAGAGACTATATCTTTACTAAAGGGTGAGATGATTGGTGGGCCACAAACAAATTCTTTTCCTGGGGCTTCAAAGGATTTAGCTTCTACAGAATCAGTTGCAGGAATTTTGCCTACACCTAACCATGTTGCCCAACAGTGGCAAGCTGATAGGTTAGGCTCTAGTTCAAATGTCTTAGATCAAGATCGTACTGACAAACATGCAGCCCCAGCACAATCACTATCTGTGCCTCTAGCAGCTCAGCAGTTTCTTCCAAATCCTGCTCCTCTTAGTGCCTTTCCTGGGTCCATGGCTATACCATCTTCTGTTCAACCTGCTAACCAAGCACCTGGTGGTGCTCATTTATTGCCCCCTCCATCATCCAGCACTGGTGAACAATTGCCACCATATCCATTATTCCCACCTGGCCTCATTCCTGGAATGGTTAGAAAGATGCAGATAGGTAGTGGGGTCCCATATTCTCCTTTGAGCCCTTTGGATATCCCTACCATCATACCACCATCAACGGTGCCCCCATCAGAAATTCTTCAAAGAGTGTCCAAATTTTTTAAGGAAATTGGAGAGGTAAATCCTTCTGAGGGCCCTATGAATTCTGATTCAAGGGATGAAGATGATGACTATGAAAGAGAATATGACAGAGAGCCTGCAGTACGAAAGGGAGGTGCTTGCATACCTCCACCCCCAAATTTGCAGGTTGATCCAGAGACAGGGACCTATGCTGATGGGACTGTAGAACGGAAACCAGGATCCAGTGGCTCGGGCAGGTTGGGGCTTGGGGCCACTGCTAATCCCAACGAGGTGAGTCAGTATGATGATGTATATACATCTTACAGGAAGCAGAGAAGCACCAATTACCATTCATCAATGAGTGCCAGAGCTGCAGCTAGATGA 2097 0.4664 MERQGHDYAAASAMAYAQQQRQAANMQQQQQQFGFHPQHQQFPSSIHGPPFIPSGPGPAHPPMQQFPYHHALQQQQPLPQLHPHAPPPPHLLLQQQHQGPPAFPSHYPPPLVPSPFYDSAPPPVAPPSDPDLHKRIDKLVEYAVKNGPDFEAMICEKQRDNPSYSFLFGGEGHGYYRYKLWLSTRPPGGPFNPPFPTSSMPMIHPPPNPLMNPSPLNASPMNPAGIGSSPSMLGPPPFQQFYDQQHHHQHPQSFGLSGRPEYDQSSKSFKGPSGPLPSDVAMELSNVLNNLNGTKESIKGAKLWFMQRSPFAPALAEALRDRVFALDEVERQLHIIYLANDILFDSLNRRTNGNDLDSEALALKPVLGSMLARIYHNPQSNEEYRKRLQQMVEFWASKKVYDQETISLLKGEMIGGPQTNSFPGASKDLASTESVAGILPTPNHVAQQWQADRLGSSSNVLDQDRTDKHAAPAQSLSVPLAAQQFLPNPAPLSAFPGSMAIPSSVQPANQAPGGAHLLPPPSSSTGEQLPPYPLFPPGLIPGMVRKMQIGSGVPYSPLSPLDIPTIIPPSTVPPSEILQRVSKFFKEIGEVNPSEGPMNSDSRDEDDDYEREYDREPAVRKGGACIPPPPNLQVDPETGTYADGTVERKPGSSGSGRLGLGATANPNEVSQYDDVYTSYRKQRSTNYHSSMSARAAAR 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02617 698 Gene3D Surp module 120 185 IPR035967 GO:0003723|GO:0006396
Spst1g02617 698 SUPERFAMILY Surp module (SWAP domain) 107 182 IPR035967 GO:0003723|GO:0006396
Spst1g02617 698 SMART 558neu5 283 414 IPR006569 -
Spst1g02617 698 MobiDBLite consensus disorder prediction 15 47 - -
Spst1g02617 698 MobiDBLite consensus disorder prediction 49 63 - -
Spst1g02617 698 MobiDBLite consensus disorder prediction 78 132 - -
Spst1g02617 698 MobiDBLite consensus disorder prediction 102 129 - -
Spst1g02617 698 MobiDBLite consensus disorder prediction 242 276 - -
Spst1g02617 698 Gene3D - 281 415 IPR008942 -
Spst1g02617 698 SMART surpneu2 133 185 IPR000061 GO:0003723|GO:0006396
Spst1g02617 698 MobiDBLite consensus disorder prediction 589 698 - -
Spst1g02617 698 ProSiteProfiles SURP motif repeat profile. 135 179 IPR000061 GO:0003723|GO:0006396
Spst1g02617 698 MobiDBLite consensus disorder prediction 1 65 - -
Spst1g02617 698 MobiDBLite consensus disorder prediction 242 272 - -
Spst1g02617 698 Pfam Surp module 136 181 IPR000061 GO:0003723|GO:0006396
Spst1g02617 698 ProSiteProfiles CID domain profile. 276 417 IPR006569 -
Spst1g02617 698 Pfam CID domain 283 407 IPR006569 -
Spst1g02617 698 MobiDBLite consensus disorder prediction 658 692 - -
Spst1g02617 698 PANTHER SR-RELATED CTD ASSOCIATED FACTOR 6 121 697 IPR039037 GO:0006874
Spst1g02617 698 MobiDBLite consensus disorder prediction 80 94 - -
Spst1g02617 698 MobiDBLite consensus disorder prediction 505 526 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02617 - - gmx:100802329 1087.79