Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02611 ATGAGGCCAAACATCGTTACTGAGGCAGGGTTGCCTACTAGGATGAATCAATGGTGGGAAAGCATTCCATTTCTCACCTCTGCAGTGGTGGTTGTCTGTGGAGTCATTTATTTGGTTTGTCTTTTGGTTGGATACGATTCCTTTGTTGAGGTTTGCTTCCTGCCATCTGCAGTTGTGTCACGGTTTCAAGTTTACAGGATTTATACTTCAATTCTTTTCCATGGTTCACTGCTTCATGTTCTCTTCAACATGATGGCTTTAGTTCCCTTGGGGTCTGAGCTGGAGAGGATCATGGGATCAGTTCGCTTGCTATATGTTGTTATCTTGTTGGCTACAAGCAATGCCATATTCCATGTTGTCATAGCACTGCTGGTGGCACACAACCCTGTTCTTACATATGATTACCTCATGAATGAGTGTGCAATAGGCTTCTCAGGAGTTCTATTTTCAATGATTGTTATAGAGACAAGCTTGAGTGGAGTTCACTCCAGGAGTGTGTTTGGGTTGTTTAATGTGCCTGCCAAGTGGTATGCATTCTTTTTGTTGGTAGTGTTCCAGCTTCTCATGCAAAATGTTTCTCTACTTGGACACCTTTGTGGCATTTTATCTGGGTTTGCATATACATATGGATTGTTTAATTTCCTCATACCTGGGACCACCTTTTATTCTTCCATTGAATCCTCCTCCTTGCTCTCATCATGTGTGAGACGTCCAAAATTTATTGTTTGCACTGGTGGAAATCCTTCCGGTTATATTCCTACACATGCAAGCCAAAATTCAACAAGTGGATTACTTTCTGGAAATATTTGGAGGAACCTATCATCATTGATGCCTCAAAGGGAAGTGTCTACACAGTCAACCCAGGACAGTAGGTTCCCTGGGAGGGGAAGGACCCTTGGTTCTAGTCAAGCTCAAACTGCTTCGGATCTTCATTCAGATTCAAATCTTCAAGCAAGACTTTTGGAGGAGGATAGTAGTCCCAATAATCCTTTAGATTCATCCACCCTTAGTAATACTCATCAGTTATCAGAAGGAAGGCATTCAACTGATAATGTAGCTACAGCGACTGCTGGTGTTCCACAGCATCAGAGTGCAGTTGTTTCGGAAGAAGGAATTAAAAAACTTGTATCGATGGGCTTTGATAGGACGCAGGTTGAAGTGGCGCTGGCAGCTGCTGATGATAATCTCAATGTTGCAGTGGAAATACTCATGAGCCAGCAGCAAGTTGCTGAAAATGACAGGGTTTGGCAAAGGGAATCTCCCAAGGGTGAAACCGCACTGATTCCAGATACACGCA 1297 0.4318 MRPNIVTEAGLPTRMNQWWESIPFLTSAVVVVCGVIYLVCLLVGYDSFVEVCFLPSAVVSRFQVYRIYTSILFHGSLLHVLFNMMALVPLGSELERIMGSVRLLYVVILLATSNAIFHVVIALLVAHNPVLTYDYLMNECAIGFSGVLFSMIVIETSLSGVHSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLCGILSGFAYTYGLFNFLIPGTTFYSSIESSSLLSSCVRRPKFIVCTGGNPSGYIPTHASQNSTSGLLSGNIWRNLSSLMPQREVSTQSTQDSRFPGRGRTLGSSQAQTASDLHSDSNLQARLLEEDSSPNNPLDSSTLSNTHQLSEGRHSTDNVATATAGVPQHQSAVVSEEGIKKLVSMGFDRTQVEVALAAADDNLNVAVEILMSQQQVAENDRVWQRESPKGETALIPDTR 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02611 432 Gene3D - 340 410 - -
Spst1g02611 432 FunFam Rhomboid-like protein 15 16 213 - -
Spst1g02611 432 PANTHER DER1-LIKE PROTEIN, DERLIN 15 301 - -
Spst1g02611 432 SMART uba_6 368 405 IPR015940 -
Spst1g02611 432 SUPERFAMILY UBA-like 361 408 IPR009060 GO:0005515
Spst1g02611 432 Pfam UBA/TS-N domain 369 403 IPR015940 -
Spst1g02611 432 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 366 406 IPR015940 -
Spst1g02611 432 SUPERFAMILY Rhomboid-like 20 214 IPR035952 -
Spst1g02611 432 Pfam Rhomboid family 60 213 IPR022764 GO:0004252|GO:0016020
Spst1g02611 432 Gene3D - 16 213 IPR035952 -
Spst1g02611 432 CDD UBA_At3g58460_like 369 404 - -
Spst1g02611 432 MobiDBLite consensus disorder prediction 280 311 - -
Spst1g02611 432 MobiDBLite consensus disorder prediction 323 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02611 Spst-Chr1 34594553 34605482 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02611 - - gmx:100805745 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02611 1 34594553 34605482 Spst1g02611 1 34594553 34605482 ECH