Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02608 ATGGCGGTTTCCGAAGAGGAATGCTCTTCGGCGAAGTCCGGTCCCTCTTCGTCTTCCTCCGCCTCGCGCTACTATCTCTCCAAATGCGTCCTCAGAGGAAGCGTCGTTCTTCAGGTCCTCCACGCTCACATCCGTTCTCCCTCCTCAAATGACATCGTTTTCGGCAAGGAGACGTCTATTGAATTGGTGGTTATTGAGGAGGATGGGAATGTACAATCTGTATGTGATCAGCCTGTCTTTGGCACCATCAAAGATCTTGCCATATTGTCTTGGAACGAAAAATTTCGTGCACGTGATCCTCAGCTGTGGGGTAAAGACCTTTTGGTTGCTACATCTGATTCTGGGAAGTTGTCGCTGCTCACATTTTGCAATGAAATGCACAGGTTTGTTTCTGTAACACATGTACAGATTTCTAATCCTGGAAACCCAATGGATCTTCCTGGAAGAAAGCTAGCGGTTGATTCCAGTGGTTGTTTTATCGCTTCTAGTGCATACGAAGATCGGCTGGCTTTGTTTTCTATGTCAATGGCCAGTGGTGATATCATTGATGAGAGAATTGTATATCCTTCTGAAAGTGAAGGGACTCCAAGTTCTTCCAGAAGCATCCATAGAACCAGTATACGTGGTACTATTTGGAGCATCTGCTTCATTTCACAAGATTCCAGACAACCAAGCAAGGAGCATAATCCTGTACTAGCTGTTATTATAAATAGGAGAGGATCACTTCAAAATGAATTGCTATTGTTGGAATGGAATGTTAAAGCACACAAAATATTTGTTATTTCTCAGTATGCTGAAGCTGGGCCTCTAGCATATGACATTGTTGAAGTTCCTAATGCTGGGGGACTTGCATTTCTATTCAGGACTGGTGATGTTCTCTTAATGGACCTTAGAGATCGTCGCAACCCATCCTGTGTCTATAAGACTAACTTGAACATTCTACCAAATGCTTTGGAAGAACAGACTTATGTGGATGACTCTTGTAAATTACACGATGTTGATGATGAACGCTTTAATGTTGCTGCCTGTGCTTTGTTGGAGCTGAGTGATTATGATCCTATGTGCATAGACAGTGACAATGGTGGTGCTAATTCAGGTTACAAATATGTATGCTCGTGGAGTTGGGAACCTGAAAATAATAGAGATCCTAGGATGATCTTCTGTGTAGATACTGGGGAATTTTTTATGATTGAAGTTATTTTTGATTCTGAAGGCCCTAAAGTTAATCTGTCAGAGTGTCTCTATAAAGGTCTACCCTGTAAAGCACTTTTGTGGGTTGAAGGTGGATATGTAGCTGCCCTTGTGGAAATGGGGGATGGTGTGGTCCTGAAATTGGTAGATGGAAGGCTATGCTATACAAACCCTATTCAAAACATTGCCCCAATCTTGGATATGGCAGTGGTGGATTATCGTGATGAGAAACATGGTCAAATGTTTGCTTGCTGCGGTGTGGCTCCAGAGGGGTCATTAAGGATAATTCGAAATGGTATTAATGTGGAAAGTCTACACAGGACTGCTTCTATATATCAAGGTATAACTGGTACTTGGACTGTCCGAATGAAAGTTACTGATTTACATCATTCTTTTCTAGTTCTATCATTTGTTGAGGAAACCAGAATATTGTCAGTTGGCTTAAGTTTTACTGATGTGACTGATTCAGTTGGTTTCCAACCTAATGTCTGTACTTTGGCATGTGGCCTTGTGACTGATGGTTTACTCGTTCAGATCCACCAATCTACTGTTAAGCTTTGTTTGCCCACTAAGGCTGCTCATTCTGAAGGTATCTCATTGTCCTCTCCTATTTGCACATCTTGGTCTCCAGACAATGTGAGCATCAGTTTGGGGGCAGTTGGGCATAATTTCATAGTTGTGTCAACCTCTAACCCATGCTTTCTGTTTATCCTTGGGGTTAGATTACTATCAGCTTATCAATATGAAATTTATGAAATGCAACATTTGGTACTTCAGAATGAATTATCATGCATTTCCATCCCTGGACAAGAAATTGAGCAAAAACCATCGAATTCGTCCATTTCAGCAAATAATAGTAACATCTCTTTCCAAAGTGGAGTGGACATTAATAAAACCTTTGTTATCGGTACACACAGACCTTCTGTGGAAATTTGGTTTTTTGAACCTGGTGGAGGAATTACAGTAGTTGCTTGTGGGACAATTTCATTAACAAATACAATAGGGACTGCCATAAGTGGTTGTGTACCTCAAGATGTACGGCTTGTATTTGTTGATAAGTATTATGTTCTTGCTGGGTTGAGGAATGGAATGCTCCTTCGCTTTGAGTGGCCAGTGGAACCGTGTCCTTCATCATCAATAAATATGGTGGATACTGCTTTATCTTCTATAAATTTGGTAAATTCTGTGGCTAATGCTTTTGACAAGAGAAATGACCTTCCTTCAATGCTTCAATTGATTGCCATTCGACGCATTGGCATTACTCCAGTTTTCTTGGTGCCACTGGGTGACACACTGGATGCTGATATAATTGCTCTCAGTGATAGGCCTTGGTTGTTGCATAGTGCCAGACATAGCCTTTCCTATACTTCTATATCATTTCAACCATCTACGCATGTAACTCCTGTTTGCTCGGTTGAGTGTCCAAAAGGAATATTATTTGTCGCAGAGAACAGTTTACATCTGGTGGAGATGGTTCACAGCAAGAGACTTAATATGCAGAAGTTTCATTTAGATGGAACTCCACGGAAAGTCCTGTATCATGATGAAAGCAAGATGTTGCTTGTGATGAGGACTGAACTGAATTGTGGTACATGTTTGTCTGACATATGCTGTGTGGATCCCCTTAGTGGGTCGGTACTGTCGTCTTTTAGACTTGAACTTGGAGAAACAGGAAAATCCATGGAATTAGTAAGAGTTGGAGGTGAGCAAGTGCTTGTTGTTGGAACTAGCCTGTCTTCGGGTCCAGCTGTAATGCCCAGTGGTGAAGCTGAAAGTTGCAAGGGTCGTCTTCTTGTTCTCTGTCTTGATCATGTGCAAAATTCAGATAGTGGTTCAATGACATTCTGTTCAAAGGCAGGGTCATCATCTAAAAGAACTTCACCGTTCCATGAAATTGTTACACATGCTCCTGAACAGTTATCAAGCAGTAGCCTTGGCAGCAGTCCTGATGATAATAGTTCTGATGGCATCAAACTTGATGAAAACGAAGTATGGCAGTTCCGACTGGCTTATGAAACGAAATGGCAGGGAGTTGTTTTTAAAATCTGTCCATATCTTGATCGTTACTTTTTGGCATCCGCTGGCAATGCTTTCTATGTTTGTGGTTTCCCTAATGACAATCCTCAAAAAGTGAGAAGGTATGCTATGGGAAGGACGCACCACATGATAACATCTTTAAGTGCACATTTTACAAGAATTGCAGTTGGTGATTGTCGTGATGGTATCATTTTATTTTCTTATCATGAGGAAGCAAGAAAATTGGAGCAACTTTGTTGTGATCCATCACGAAGGTTAGTTGCTGATTGCATCCTGATGGATGCTGATACTGCTGTAGTTTCGGATCGTAAAGGAGGCATTGCTATTTTATGTTCAGATCATTTGGAAGGTATGCTTGAACTAAGCCTTTCTCTTTTGTAA 3609 0.4131 MAVSEEECSSAKSGPSSSSSASRYYLSKCVLRGSVVLQVLHAHIRSPSSNDIVFGKETSIELVVIEEDGNVQSVCDQPVFGTIKDLAILSWNEKFRARDPQLWGKDLLVATSDSGKLSLLTFCNEMHRFVSVTHVQISNPGNPMDLPGRKLAVDSSGCFIASSAYEDRLALFSMSMASGDIIDERIVYPSESEGTPSSSRSIHRTSIRGTIWSICFISQDSRQPSKEHNPVLAVIINRRGSLQNELLLLEWNVKAHKIFVISQYAEAGPLAYDIVEVPNAGGLAFLFRTGDVLLMDLRDRRNPSCVYKTNLNILPNALEEQTYVDDSCKLHDVDDERFNVAACALLELSDYDPMCIDSDNGGANSGYKYVCSWSWEPENNRDPRMIFCVDTGEFFMIEVIFDSEGPKVNLSECLYKGLPCKALLWVEGGYVAALVEMGDGVVLKLVDGRLCYTNPIQNIAPILDMAVVDYRDEKHGQMFACCGVAPEGSLRIIRNGINVESLHRTASIYQGITGTWTVRMKVTDLHHSFLVLSFVEETRILSVGLSFTDVTDSVGFQPNVCTLACGLVTDGLLVQIHQSTVKLCLPTKAAHSEGISLSSPICTSWSPDNVSISLGAVGHNFIVVSTSNPCFLFILGVRLLSAYQYEIYEMQHLVLQNELSCISIPGQEIEQKPSNSSISANNSNISFQSGVDINKTFVIGTHRPSVEIWFFEPGGGITVVACGTISLTNTIGTAISGCVPQDVRLVFVDKYYVLAGLRNGMLLRFEWPVEPCPSSSINMVDTALSSINLVNSVANAFDKRNDLPSMLQLIAIRRIGITPVFLVPLGDTLDADIIALSDRPWLLHSARHSLSYTSISFQPSTHVTPVCSVECPKGILFVAENSLHLVEMVHSKRLNMQKFHLDGTPRKVLYHDESKMLLVMRTELNCGTCLSDICCVDPLSGSVLSSFRLELGETGKSMELVRVGGEQVLVVGTSLSSGPAVMPSGEAESCKGRLLVLCLDHVQNSDSGSMTFCSKAGSSSKRTSPFHEIVTHAPEQLSSSSLGSSPDDNSSDGIKLDENEVWQFRLAYETKWQGVVFKICPYLDRYFLASAGNAFYVCGFPNDNPQKVRRYAMGRTHHMITSLSAHFTRIAVGDCRDGIILFSYHEEARKLEQLCCDPSRRLVADCILMDADTAVVSDRKGGIAILCSDHLEGMLELSLSLL 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02608 1202 MobiDBLite consensus disorder prediction 1035 1054 - -
Spst1g02608 1202 MobiDBLite consensus disorder prediction 1 21 - -
Spst1g02608 1202 Gene3D - 497 893 IPR015943 GO:0005515
Spst1g02608 1202 FunFam Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 497 893 - -
Spst1g02608 1202 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 29 1187 - -
Spst1g02608 1202 MobiDBLite consensus disorder prediction 1035 1050 - -
Spst1g02608 1202 Gene3D - 35 450 IPR015943 GO:0005515
Spst1g02608 1202 Pfam CPSF A subunit region 933 1189 IPR004871 GO:0003676|GO:0005634
Spst1g02608 1202 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 106 664 IPR018846 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02608 Spst-Chr1 34521123 34530442 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02608 K12830 - gmx:100806799 2153.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02608 1 34521123 34530442 Spst1g02608 1 34521123 34530442 ECH