Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02573 ATGTACGCGCCTTTCGCTTCTCTATCCAGTTACCCTGTGACCATGAATAACTTAACGACGAGTTTCGCAGTTCGAATATGCGACACGCGCCGCCACCTACTCCCTGTACGACACCGTTCCACATTCAGCCGCGTCGCCACCAAATTCACACATCCAAGAATCGTTTGCATGGCCGAACCTTATTTGATAACGAAGTTGGAGTCTGCTGAGAAAACCTGGAAAGAATTATCGGTCAAGCTTGCTGATCCAGACATTGTGTCTGATCCAAAGGAGTATCAGAAGTTAGCACAATCAGTGGCAGAGCTTGATGAGGTTGTGTCCACGTATAGGAAATTTAAAGACTGTGAGAAGCTTCTAGAAGAAACCAAAGCTTTAGCGAAGGATAATGGTAATGATGAGGATATGGCGGAAATGATATCTTATGAAATCGACTCGTTGTCCAAGCAACTTGCAGAGCTTGAGGACAAGCTTAAGGTGCTACTGCTTCCCAGTGATCCTCTGGATGCTAGAAACATAATGATTGAAGTACGAGCAGGAACTGGTGGTGACGAGGCTGGAATATGGGCTGGTGATCTTGTTCGAATGTATGAAAGATATAGTGAAAGGAATTCTTGGAAGTATTCTCCTGTCTCAAGCTCTGCGGCAGAAAAAGGAGGATACAAAACTTATGTGATGGAGATAAAAGGAAATCGTGTTTACAGTAAATTGAAATATGAATCTGGTGTGCACCGTGTTCAACGTGTTCCCCTGACAGAAACACAGGGCCGGGTACATACTTCTACTGCAACAGTGGCTATCATGCCAGAGGCTGATGAAGTTGAAGTCGTAATTGACCCCAAAGATATTGAACTGACAACGGCACGTTCTGGGGGTGCCGGAGGACAGAATGTTAACAAGGTTGAAACAGCCATCGATCTCTTCCACAAACCAACGGGAATCCGCATCTTTTGTACTGAAGAAAGAACGCAACTCAAAAACAAGAATCGTGCTTTTCAGTTGCTCCGAGCAAAACTATATGAGATAAAAGTAAGGGAACAGCAAGAGTCGTTACGAAATCAAAGGAAATCACAGGTTGGTACAGGTGCACGAGCAGAAAAAATTCGGACATACAATTATAAGGACAACAGGGTTACTGACCACAGATTGAAGACAAACTATGAACTCACCTCTTTTCTAGATGGTGACATAGAAGATGCTGTTCAGTCCTGCGCCACAATGGAACAAAAGGAACTTCTGGAAGAACTTGCTGAATCTGTTGGTGCTACTGCTGCCTGA 1275 0.4431 MYAPFASLSSYPVTMNNLTTSFAVRICDTRRHLLPVRHRSTFSRVATKFTHPRIVCMAEPYLITKLESAEKTWKELSVKLADPDIVSDPKEYQKLAQSVAELDEVVSTYRKFKDCEKLLEETKALAKDNGNDEDMAEMISYEIDSLSKQLAELEDKLKVLLLPSDPLDARNIMIEVRAGTGGDEAGIWAGDLVRMYERYSERNSWKYSPVSSSAAEKGGYKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLKNKNRAFQLLRAKLYEIKVREQQESLRNQRKSQVGTGARAEKIRTYNYKDNRVTDHRLKTNYELTSFLDGDIEDAVQSCATMEQKELLEELAESVGATAA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02573 424 Pfam PCRF domain 70 264 IPR005139 GO:0006415
Spst1g02573 424 Hamap Peptide chain release factor 1 [prfA]. 62 416 IPR004373 GO:0006415|GO:0016149
Spst1g02573 424 SUPERFAMILY Release factor 71 412 IPR045853 -
Spst1g02573 424 Gene3D - 337 419 - -
Spst1g02573 424 FunFam Peptide chain release factor 1 278 343 - -
Spst1g02573 424 Coils Coil 136 156 - -
Spst1g02573 424 Gene3D - 56 166 - -
Spst1g02573 424 FunFam Peptide chain release factor 1 340 419 - -
Spst1g02573 424 Gene3D - 168 277 - -
Spst1g02573 424 Gene3D - 278 336 - -
Spst1g02573 424 NCBIfam peptide chain release factor 1 58 417 IPR004373 GO:0006415|GO:0016149
Spst1g02573 424 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 288 304 IPR000352 GO:0003747|GO:0006415
Spst1g02573 424 SMART PCRF_a_2 124 239 IPR005139 GO:0006415
Spst1g02573 424 FunFam Peptide chain release factor 1 168 278 - -
Spst1g02573 424 PANTHER LD18447P 57 418 - -
Spst1g02573 424 Pfam RF-1 domain 271 381 IPR000352 GO:0003747|GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02573 Spst-Chr1 34285224 34290206 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02573 K02835 - gmx:100805037 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02573 1 34285224 34290206 Spst1g02573 1 34285224 34290206 ECH