Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02553 ATGGCTGTGGTTGCAGTGCAGCAATTCGTGTGCTTCTCGGAATCAAATTGGAGGAATATAACACGGCCGTGCATTCCCTCTCACAGTACAATTCTTCTACGTTCAAGCAAAAAAAATCATTTTTCTCTGATTTCATGCTCTTCATCACAGACCCCAGAAGCTGATACTCAGACCGCTGAATCTTGCGTCAATTTGGGTCTCGAGCTCTTCTCCAAAGGACGGGTTAAAGATGCTTTAACCCAGTTCGAAAGTGCACTTTCCTTGGGCCCTAATCCAGTGGAGGCCCAAGCTGCGTTCTACAACAAAGCTTGCTGCCATGCATACAGGGGAGAAGGAAAGAAAGCAGCTGATTGTCTCCGCACTGCTTTGAGGGAATACAACCTGAAATTTGGTACCATACTCAATGATCCCGACTTGGCATCCTTCAGAGCATTGCCTGAATTCAAGGAACTACAAGAAGAGGCTAGGCTTGGTGGGGAAGATATTGGTTACAGTTTTCGGCGAGATCTAAAACTTATTAGTGAAGTTCAAGCACCATTTCGTGGGGTTAGGAGGTTCTTTTATGTAGCACTGTCAGCAGCTGCAGGAATATCATTGTTTTTTACTGTGCCAAGGCTAATTCGTGCAATTATTGGTGGTGATGGTGCTCCTGATCTCTTGGCTACTTCTGGGAATGCTGCCATCAATATTGGAGGTATTGTTGTTCTTGTGGCATTATTCTTTTGGGACAATAAAAAAGAGGAGGAACAACTTGCACAAATATCTCGAGATGAGACACTATCAAGGCTGCCTTTGCGGCTTTCAACTAATCGTGTGGTTGAACTTGTGCAGCTACGGAATATAGTTCGACCGGTTATATTAGCAGGAAAAAAGGAAACAGTGTCTTTGGCTATGCAAAGAGCCGAGAGATTTCGCACGGAGCTCCTTAGACGCGGTGTTCTGTTAGTTCCTGTCATCTGGGGAGAAGGTCGGGAAACAAAAATTGAGAAGAAAGGATTTGGTCTGCAGCCAAAAGCTGCTGAAGCTCTTCCATCTATTGGGGAAGATTTTGAGAAGCGAGCACAGTCAGTAACTGCAAAATCGAAGTTGAAATCTGAAATTAGGTTCAAGGCTGAGGTTTTGTCGCCTGCTGAATGGGAACGGTGGATAAGAGATCAGCAGAAGTCCGAAGGAGTTTCACTTGGTGAAGATGTGTACATAATACTGCGCTTAGATGGAAGAGTTCGAAGATCAGGGAAAGGCATGCCTGATTGGCAGCAAATTGTGCAGGAGCTACCACCAATGGAAGCATTTTTAAGCAAGCTAGAAAGATGA 1314 0.4482 MAVVAVQQFVCFSESNWRNITRPCIPSHSTILLRSSKKNHFSLISCSSSQTPEADTQTAESCVNLGLELFSKGRVKDALTQFESALSLGPNPVEAQAAFYNKACCHAYRGEGKKAADCLRTALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYSFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLFFTVPRLIRAIIGGDGAPDLLATSGNAAINIGGIVVLVALFFWDNKKEEEQLAQISRDETLSRLPLRLSTNRVVELVQLRNIVRPVILAGKKETVSLAMQRAERFRTELLRRGVLLVPVIWGEGRETKIEKKGFGLQPKAAEALPSIGEDFEKRAQSVTAKSKLKSEIRFKAEVLSPAEWERWIRDQQKSEGVSLGEDVYIILRLDGRVRRSGKGMPDWQQIVQELPPMEAFLSKLER 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02553 437 SUPERFAMILY TPR-like 53 125 IPR011990 GO:0005515
Spst1g02553 437 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 42 435 - -
Spst1g02553 437 Gene3D Tetratricopeptide repeat domain 46 144 IPR011990 GO:0005515
Spst1g02553 437 Pfam Low psii accumulation1 / Rep27 167 244 IPR021883 -
Spst1g02553 437 SMART tpr_5 59 92 IPR019734 GO:0005515
Spst1g02553 437 SMART tpr_5 96 129 IPR019734 GO:0005515
Spst1g02553 437 ProSiteProfiles TPR repeat profile. 59 92 IPR019734 GO:0005515
Spst1g02553 437 FunFam Protein LOW PSII ACCUMULATION 1, chloroplastic 46 152 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02553 - - gmx:100784188 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02553 1 34116616 34120832 Spst1g02553 1 34116616 34120832 ECH