Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02548 ATGTTAGAAAAGTTTTTGGGAGCTCAGAGGGCGCGAAGATTCCAGAGAGCTCTCAGGCATTGCAGGGTCACGATCCTCTGTTTGGTCCTCACCATTGTTGTCCTGCGCGGCACCATCGGCGCCGGGAAATTCGGCACGCCGGAGCAGGACTTCGTCGACATTCGCGACCGCTTCTACACCCGCAAGCTTCCCGAGCACAACCACCTCCTCGGCCAGCTTCAATCCACGACGTCGTTTTCCTCTTCCTCTTCTGACGATTCCACTTCCACCACTAACTACAACGCCTTGGACATCAACACCATATTGGTCGACGAACCGGAAGACGAGAACCGGGAGAAAGTGAACCCAAACGAGCCGTATCGTCTCGGCCCCAAAATATCGACCTGGGACGAACAACGGTCTCGCTGGCTTCGTGAGAACCCCAATTTCTCTAATTTCGTTCGGCCCAACAAGCCTCGTGTGCTTCTGGTAACTGGGTCGTCGCCGAAACCGTGCGAGAATCCCGTTGGGGATCATTACTTGTTGAAGTCTATTAAGAATAAAATTGACTATTGTCGTTTGCATGGGATTGAGGTGTTTTACAACATGGCTCTCCTTGACGCTGAGATGGCAGGGTTTTGGGCCAAGCTTCCTTTGATTCGAAAGCTTCTCTTGTCTCACCCTGAGGTGGAGTTTCTATGGTGGATGGATAGTGATGCCATGTTCACGGACATGGCGTTTGAGGTGCCGTGGGAGAGGTATAAGGACCATAACTTGGTGATGCATGGGTGGGATGAGATGGTTTATGACGACAAAAATTGGATTGGGCTGAACACTGGGAGTTTTTTGTTGAGGAATTGTCAGTGGTCTTTGGATATTCTTGATGCTTGGGCTCCAATGGGGCCTCTAGGGAGGGTTAGGGATGAGGCTGGGAAAGTTCTCACACGTGAGCTTAAGGATAGGCCTGTTTTTGAGGCTGATGATCAATCTGCAATGGTTTATCTGCTGGCTAAGGAGAGGGACAAGTGGGGTGATAAGGTTTATCTTGAGAACGGTTATTACTTGCATGGTTATTGGGGAATTTTGGTTGATAAGTATGAGGAGATGATTGAGAATTACCATCCTGGCCTTGGGGACCATAGATGGCCCTTGGTGACTCATTTTGTGGGGTGCAAGCCTTGTGGGAAGTTTGGGGATTACCCTGTTGAGAGGTGCTTGAAACAAATGGATAGGGCCTTCAATTTTGGGGATAATCAGATATTGCAGATTTATGGGTTCACCCATAAGTCGTTGGCTAGTAAGGGAGTTAAGAGAATACGGGATGAGACCAGCAATCCCCTTCAGGTCAAGGATGAACTTGGGTTGCTTCATCCAAGCATTTAA 1362 0.4927 MLEKFLGAQRARRFQRALRHCRVTILCLVLTIVVLRGTIGAGKFGTPEQDFVDIRDRFYTRKLPEHNHLLGQLQSTTSFSSSSSDDSTSTTNYNALDINTILVDEPEDENREKVNPNEPYRLGPKISTWDEQRSRWLRENPNFSNFVRPNKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRLHGIEVFYNMALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYKDHNLVMHGWDEMVYDDKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPLGRVRDEAGKVLTRELKDRPVFEADDQSAMVYLLAKERDKWGDKVYLENGYYLHGYWGILVDKYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFNFGDNQILQIYGFTHKSLASKGVKRIRDETSNPLQVKDELGLLHPSI 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02548 453 Pfam galactosyl transferase GMA12/MNN10 family 151 390 IPR008630 GO:0016020|GO:0016757
Spst1g02548 453 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 150 293 IPR029044 -
Spst1g02548 453 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 9 445 IPR008630 GO:0016020|GO:0016757
Spst1g02548 453 FunFam xyloglucan 6-xylosyltransferase 2 150 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02548 Spst-Chr1 34095908 34097269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02548 1 451 Glycosyltransferase AT3G62720 76.549 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02548 K08238 - gmx:100794266 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02548 1 34095908 34097269 Spst1g02548 1 34095908 34097269 ECH