Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02546 ATGCTTCCTCTATCCCTTCTCAAAACTGCCCAAGGTCACCCCATGTTGGTCGAACTGAAAAACGGGGAGACTTATAACGGGCATTTGGTTAATTGCGATACATGGATGAACATCCATCTCCGAGAAGTCATTTGTACATCTAAAGATGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTTCCTGATGAGGTTATTGACAAAGTTCAAGAAGAAACCAAGACCCGAGCAGATCGCAAACCACCTGGTGTGGGGCGTGGGCGGGGAAGAGGCAGAGAGGAAGGTGCTGGTGGACGCCAACCAAAAGGAATTGGGCGTGGTCTTGATGATGGTGGTGCCAAGGGAGCTGGAGGAGGTCGAGGCAAGGGAGGCCCTAGTGGAAAGCCAGGTGGAAACAGAGAGGCTGATTCTAACAAGTGGCGGCATGAACTACTTCAGATGGGCCTGTTGGCTACTTTCGGAGGGCATATGTGCTCTCGTCTTTAA 516 0.5 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKTRADRKPPGVGRGRGRGREEGAGGRQPKGIGRGLDDGGAKGAGGGRGKGGPSGKPGGNREADSNKWRHELLQMGLLATFGGHMCSRL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02546 171 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 2 121 IPR027141 GO:0006396
Spst1g02546 171 MobiDBLite consensus disorder prediction 80 109 - -
Spst1g02546 171 SUPERFAMILY Sm-like ribonucleoproteins 3 128 IPR010920 -
Spst1g02546 171 SMART Sm3 5 71 IPR001163 -
Spst1g02546 171 ProSiteProfiles Sm domain profile. 2 75 IPR047575 GO:0003723
Spst1g02546 171 Gene3D - 1 83 - -
Spst1g02546 171 MobiDBLite consensus disorder prediction 80 150 - -
Spst1g02546 171 Pfam LSM domain 6 70 IPR001163 -
Spst1g02546 171 CDD LSm4 2 77 IPR034101 GO:0000398|GO:0000956
Spst1g02546 171 FunFam U6 snRNA-associated Sm-like protein LSm4 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02546 Spst-Chr1 34086662 34088814 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02546 K12623 - gmx:100786834 215.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02546 1 34086662 34088814 Spst1g02546 1 34086662 34088814 ECH