Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02545 ATGGAGAGCAGTACGGCCATGGATGTCGAGGAGAAACCTTCACCCAACTCCACCAACGTTAAACGCTTTGGCCTTAAAAACTCTATTCAAACCAACTTCGGCGACGACTATGTTTTCCAAATTGTACCAAAGGATGATTGGAGTGCAATGGCGGTTTCTTTGTCAACCAACGCAGTGAAACTGTATTCACCTATGGCGGGTCAATATTTTGGAGAGTGCAAGGGTCACTCTGCAACCATCAATCAGATTTTGTTTTCGGGTTCTTCACATCACCATGTTTTGGGTTCGTGTTCTTCTGATGGCACTATTAGAGCTTGGGACACACGCACATTTCAGCAGGTTTCTTGCATAGATGCTGGTTCTTCTCAGGAGGTTTTCAGCTTCTGTCTTGGAGGAACTAGTGGGAATTTAGTTGCCGCCGGATGTAAATCGCAGATACTGTTCTGGGATTGGAGAAATATGAAGCGAATTGCATGCCTGGAAGAATCTCATGTGGATGATGTCACTCAGGTTCATTTTGTCCCCAACGAACAAGGCAAGCTTATTTCTGCTTCAGAAGATGGGTTGATCTGCACATTTGATACTACTGGAGATATCAATGATGATGATCATCTAGAATCAGTGATTAATATGGGGACTTCAATTGCAAAGGTGGGGATTTTTGGAGAGAGTTACCAGAAGCTTTGGTGTTTAACACATATTGAAACCTTGGGTATCTGGAACTGGAAAGATGGAAGAAATGAAGGAAACTTCTCAGATGCACGTACTTTAGCCTCTGAAAGTTGGAATTTGGATCATGTTGACTATTTCATTGATTGCCACTACTCCAGAGAAGCTGAAAAACTATGGGTGATTGGTGGCACTAATACTGGTACTATGGGCTACTTTCCTGTAAATTACCAAGGAACTGCAACAATTGGAGCTGCGGAAGCAATTCTTGAAGGTGGGCACACCAGTGTTATTAGGAGTGTTCTACCCATGTCGAAAATTCATTCAAATAGTCCTACCCAAGGCATTTTTGGATGGACTGGTGGGGAAGATGGTAGGCTATGTTGTTGGCTCTCTGATGAGTCTTCTGAATCAAATCAATCTTGGATTTCAAGCACATTGATTATCAGGCCAGAAAAAACTCGCAAGAAAAATCGTCATCAACCCTACTAG 1161 0.4281 MESSTAMDVEEKPSPNSTNVKRFGLKNSIQTNFGDDYVFQIVPKDDWSAMAVSLSTNAVKLYSPMAGQYFGECKGHSATINQILFSGSSHHHVLGSCSSDGTIRAWDTRTFQQVSCIDAGSSQEVFSFCLGGTSGNLVAAGCKSQILFWDWRNMKRIACLEESHVDDVTQVHFVPNEQGKLISASEDGLICTFDTTGDINDDDHLESVINMGTSIAKVGIFGESYQKLWCLTHIETLGIWNWKDGRNEGNFSDARTLASESWNLDHVDYFIDCHYSREAEKLWVIGGTNTGTMGYFPVNYQGTATIGAAEAILEGGHTSVIRSVLPMSKIHSNSPTQGIFGWTGGEDGRLCCWLSDESSESNQSWISSTLIIRPEKTRKKNRHQPY 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02545 386 ProSitePatterns Trp-Asp (WD) repeats signature. 94 108 IPR019775 -
Spst1g02545 386 PANTHER UNCHARACTERIZED 18 386 IPR039328 -
Spst1g02545 386 MobiDBLite consensus disorder prediction 1 20 - -
Spst1g02545 386 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 73 110 - -
Spst1g02545 386 SMART WD40_4 153 194 IPR001680 GO:0005515
Spst1g02545 386 SMART WD40_4 66 107 IPR001680 GO:0005515
Spst1g02545 386 SMART WD40_4 110 150 IPR001680 GO:0005515
Spst1g02545 386 SUPERFAMILY WD40 repeat-like 38 353 IPR036322 GO:0005515
Spst1g02545 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 73 116 IPR001680 GO:0005515
Spst1g02545 386 Gene3D - 8 217 IPR015943 GO:0005515
Spst1g02545 386 Pfam WD domain, G-beta repeat 68 107 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02545 K24758 - gmx:100794786 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02545 1 34081851 34085552 Spst1g02545 1 34081851 34085552 ECH