Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02533 ATGGCTTCGAGCTTGGTTTTCCGAGGGCACGAGGTTCAACCAGTGAACGACGGGTATTCCCCGAAGCCGCAAAAGCCATGGCTCTCCCTCCGCTACATCCTCCGCGAGCAGCGACTCCATTTTCTCCTCCTCGGCGTTCTCCTCGCCTCCCTCTTCTTCCTCCTCCTCCCTTCCTCTTCTCCTCCCATCCAGGCCCACGACCCGTTCCCCGCCTCTTTAACGCCCACCATCAACACCCGAAGCTATGACGTGGCGGTGCATTCCGTGGGGAAGATTCCCCTAGGGATTAAGCGGAAGGGGCTCCGGATCGTGGTGACGGGCGGGGCCGGATTCGTCGGGTCGCACTTAGTGGATCGGTTGATTGCCCGAGGAGACAGCGTGATTGTGGTTGACAATTTCTTCACTGGAAGGAAAGAAAACGTGATGCACCATTTCGGGAACCCCAATTTTGAACTTATCCGACACGACGTCGTTGAGCCTCTCCTCTTGGAAGTCGACCAGATCTACCATCTCGCTTGCCCCGCCTCCCCTGTCCATTACAAGTTCAATCCGTATTTTAATGGAATTGGAATCCTTAATTGGGGTAGTTTGGTTCACAAGACCAACGTGGTGGGCACGTTGAACATGCTGGGGCTAGCTAAAAGGGTTGGCGCGAGGTTCTTGTTAACCAGTACCAGCGAGGTTTATGGAGATCCTCTGCAGCACCCTCAGAAGGAGACTTACTGGGGCAACGTCAATCCCATCGGTGTTCGAAGCTGCTACGACGAGGGAAAGCGTACGGCTGAAACGTTGACCATGGATTACCACAGAGGGGCTGGAGTTGAGGTGCGAATAGCTAGGATTTTCAACACCTACGGGCCCCGAATGTGCTTAGACGATGGTCGCGTTGTTAGTAACTTCGTTGCTCAGGCACTGAGGAAGGAGGCTTTGACCGTTTATGGGGATGGGAAGCAAACTCGAAGTTTCCAATACGTTTCTGATTTGGTGGAGGGGCTGATGCGCCTTATGGAAGGAGAACATGTGGGACCTTTCAATCTTGGAAATCCCGGTGAATTCACCATGCTTGAACTTGCCAAGGTGGTCCAAGAAACAATAGATCCAGAGGCTAAGATAGAGTACAGGCCGAACACAGAGGATGACCCACACAAGAGAAAGCCTGATATTAGTAGGGCCAAGGAGTTACTGGGCTGGGAACCCAAGGTGGACCTACGCAAGGGACTCCCTCTAATGGTTTCTGACTTCCGACTACGCATTTTTGGGGACCAAAAGGACGGAGCAACCTCTACCTAA 1290 0.5326 MASSLVFRGHEVQPVNDGYSPKPQKPWLSLRYILREQRLHFLLLGVLLASLFFLLLPSSSPPIQAHDPFPASLTPTINTRSYDVAVHSVGKIPLGIKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPYFNGIGILNWGSLVHKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQALRKEALTVYGDGKQTRSFQYVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAKVVQETIDPEAKIEYRPNTEDDPHKRKPDISRAKELLGWEPKVDLRKGLPLMVSDFRLRIFGDQKDGATST 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02533 429 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 99 415 IPR036291 -
Spst1g02533 429 FunFam UDP-glucuronic acid decarboxylase 1 234 419 - -
Spst1g02533 429 FunFam UDP-glucuronic acid decarboxylase 2 97 233 - -
Spst1g02533 429 CDD UGD_SDR_e 102 415 - -
Spst1g02533 429 Pfam GDP-mannose 4,6 dehydratase 105 408 IPR016040 -
Spst1g02533 429 Gene3D - 234 418 - -
Spst1g02533 429 Gene3D - 97 233 - -
Spst1g02533 429 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 21 422 IPR044516 GO:0042732|GO:0048040|GO:0070403
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02533 Spst-Chr1 33954288 33959128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02533 20 407 Miscellaneous Gene Families AT4G00110 26.389 2.56e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02533 K08678 - gmx:100782935 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02533 1 33954288 33959128 Spst1g02533 1 33954288 33959128 ECH