Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02512 ATGGCCTCTGCATCCTCCATGTCAGTTTCTTTAGAATGCGTGAACGCCTGCAAGCTCTGGAGAGGAGACGGAAGCGGAAGATTCGACTGTGGTCTTCTTTCGTGCGCTTGGAAAGCTCCGAGGGTTCTCACCGGCTTTCTTGCCAGCACTGCTCATCCTCACCACTGTTCGGACTTGTCCAATGGCCGTAATGGACGAAGGAACCGGTATAATTTTGGATGTGAAGCCTTTAGTGTAGGTGGTTCATGTCCCGATGAACCACTTGATATTGTACTTTTTGAAGGATTGACTAGATCAAACTTGTCTCAAGTTGCTCCTAGAAAATGGCAATTATGTTATTCTTCGGCCTTCCCTTCGGACTCTGCCACTGAGTTTTCCCCGAAAAGTTTGTGGGAGGATCTTAAACCTGCTATCTCGTACCTGTCCTCTAAAGAACTGGAGTTAGTCTACAATGCTTTTATGTTGGCGTTTAAAGCTCATGATGGTCAGAAAAGACGCAGTGGTGAACCCTTCATCATTCACCCAGTGGAGGTTGCACGTATTCTTGGAGAACTAGAACTTGACTGGGAGTCGATTGCTGCTGGATTACTTCATGATACAGTTGAGGATACAAATGTGGTTACTTTTGAGAGGATAGAGGAGGAGTTTGGTGCTACCGTGCGCCACATTGTGGAAGGAGAGACCAAGGTGTCAAAACTGGGAAAGTTGAAGTATAAGAATGAAAATGATTCCGTTAAAGATGTGAAGGCAGAAGATCTTCGGCAAATGTTTCTGGCTATGACAGAGGAGGTTCGTGTTATAATTGTCAAATTAGCAGACAGGTTGCATAACATGCGCACGCTATCACATATGCCTCCGCATAAACAGACTAGCATTGCAATGGAGACATTGCAGGTATTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAATCTGTCTTTTATGTACACAAATGCTGAAGACTATGCTAAGGTGAAGAGAAGAGTAGCAGAGCTATACAAAGAACACGAGAAAGAACTTCTGGAGGCAAACAAAATATTAATGAAGAAAATACAAGATGATCAATTCTTGGACCTTTTAACCGTTAAAACGGAAGTCCGTGCTGTATGTAAAGAGCCCTACAGGTTAAGCCCCAAATCTCAATGTCAATGTATCTATAAAGCAGTTCTCAAATCGAAAAGTTCAATTAGCGAGATTAACCAAATTGCACAGCTTCGTATTATTATTAAGCCAAAGTCATGCATTGGGGTTGGGCCTTTATCCAATCCACAACAGATTTGCTATCATGTTCTGGGGTTGATCCATGGAATCTGGACCCCTATTCCTAGATCTGTGAAGGATTATATTGCAACCCCCAAACCAAATGGCTACCAAAGTCTCCATACCACTGTCATCCCATTTTTGTATGAAAGCATGTTCAGGCTAGAAGTCCAGATTAGAACGGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCTGCTCATTATAGTGGGCGAGAATTTGTCACAGGCTTGGTCGGAAGTGCAACACCAAGTGGTAAAAGCTCCAGAGGGAAGACAGTTTGTCTTAACAATGCAAATATTGCACTCCGAATTGGCTGGCTTAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGTAACATGAGTTCTAGGGAATTTGTAGATACTATTACAAGAGATCTGCTTGGTAGTCGTGTCTTTGTCTTCACACCAAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTAGTGTCATTGATTATGCATATATGATACACACTGAAATAGGCAACAAAATGGTAGCTGCAAAGGTCAATGGCAATCTTGTTTCCCCAACTCATGTGCTGGCAAATGCAGAAGTTGTGGAGATAATCACGTATAACGCACTTTCCAGCAAATCAGCTTTTCAGAGGCATAAACAGTGGTTGCAACATGCTAAAACACGGAGTGCGAGACACAAAATAATGAAGTTTCTGAGGGAGCAAGCTGCACGCTCTGCTTCTGATATCACTACGGAAGCAGTGAATGACTTTGTTACTGATTCCGATGGGGATTGTGAATCTGAAGAGCTATCAAAGGGTTCCAGTGGTTCCAAATATCCATGGGGTAAAATGTTTGTGAATGGAGAGGAAATATCAACTTCAGGAAGAAGTGAGACCGTCCTCCAAAGAAAGAATGGAAGTGTTTGGATTCCCAAGGTCAATGGAAAACATAATAAGCATGTGCAGCATGAAAGTTTCAACGGCAAAGGGGAGATGTTACTGCAGGGAAACCTTGTTGCAAAGATGATTCAAGTTAACATTCCAAGATATAAGGAAGTCCTGCCAGGTTTAGAAAGTTGGCAATCCCAGAAAATTGCTTCTTGGCACAATATGGAAGGGCATTCCATCCAATGGTTATCTGTAGTATGTATAGATCGAAGAGGCATGATGGCTGAGGTGACTACCGCATTGTCCACTGCAGGCATAGCCATATGCTCTTGCGTGGCGGAGATTGATGGAGGAAGGGGAATGGCTGTTATGGTATTTCACGTAGAAGGAAATTTAGAAAATTTGGTCAGTGCTTGCTCTAAAGTAGATCTGATATTAGGTGTTTTGGGATGGTCTACTGGTTGCAGCTGGCCTAGCTTGATGGAAGATCGTAGCGTTCTCGAATGCTAG 2682 0.4303 MASASSMSVSLECVNACKLWRGDGSGRFDCGLLSCAWKAPRVLTGFLASTAHPHHCSDLSNGRNGRRNRYNFGCEAFSVGGSCPDEPLDIVLFEGLTRSNLSQVAPRKWQLCYSSAFPSDSATEFSPKSLWEDLKPAISYLSSKELELVYNAFMLAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENDSVKDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQTSIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVAELYKEHEKELLEANKILMKKIQDDQFLDLLTVKTEVRAVCKEPYRLSPKSQCQCIYKAVLKSKSSISEINQIAQLRIIIKPKSCIGVGPLSNPQQICYHVLGLIHGIWTPIPRSVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFVTGLVGSATPSGKSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGASVIDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSASDITTEAVNDFVTDSDGDCESEELSKGSSGSKYPWGKMFVNGEEISTSGRSETVLQRKNGSVWIPKVNGKHNKHVQHESFNGKGEMLLQGNLVAKMIQVNIPRYKEVLPGLESWQSQKIASWHNMEGHSIQWLSVVCIDRRGMMAEVTTALSTAGIAICSCVAEIDGGRGMAVMVFHVEGNLENLVSACSKVDLILGVLGWSTGCSWPSLMEDRSVLEC 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02512 893 Gene3D Hypothetical protein af1432 129 324 - -
Spst1g02512 893 ProSiteProfiles TGS domain profile. 570 633 IPR004095 -
Spst1g02512 893 SMART RelA_SpoT_2 385 509 IPR007685 GO:0015969
Spst1g02512 893 SUPERFAMILY TGS-like 561 633 IPR012676 -
Spst1g02512 893 Pfam TGS domain 574 633 IPR004095 -
Spst1g02512 893 CDD TGS_RSH 575 633 IPR033655 -
Spst1g02512 893 SUPERFAMILY HD-domain/PDEase-like 136 324 - -
Spst1g02512 893 ProSiteProfiles ACT domain profile. 806 877 IPR002912 -
Spst1g02512 893 CDD NT_Rel-Spo_like 366 497 IPR007685 GO:0015969
Spst1g02512 893 SMART hd_13 167 287 IPR003607 -
Spst1g02512 893 SUPERFAMILY Nucleotidyltransferase 328 507 IPR043519 -
Spst1g02512 893 ProSiteProfiles HD domain profile. 171 278 IPR006674 -
Spst1g02512 893 Gene3D - 567 642 IPR012675 -
Spst1g02512 893 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 7 887 - -
Spst1g02512 893 FunFam GTP pyrophosphokinase RelA 130 325 - -
Spst1g02512 893 FunFam GTP pyrophosphokinase (RelA/SpoT) 566 640 - -
Spst1g02512 893 Gene3D - 806 872 - -
Spst1g02512 893 SUPERFAMILY ACT-like 806 865 IPR045865 -
Spst1g02512 893 Pfam HD domain 152 309 - -
Spst1g02512 893 CDD HDc 169 300 IPR003607 -
Spst1g02512 893 Pfam Region found in RelA / SpoT proteins 385 503 IPR007685 GO:0015969
Spst1g02512 893 Gene3D Beta Polymerase, domain 2 326 489 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02512 Spst-Chr1 33782338 33789576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02512 181 505 EF-hand Containing Proteins AT3G17470 29.518 1.30e-34 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02512 K00951 - gmx:100786637 1630.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02512 1 33782338 33789576 Spst1g02512 1 33782338 33789576 ECH