Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02508 ATGCAACTGTTCTTGCACTGGATTCAGAACTTTCTTGCCCCATTGCCGTTTCAACTTGTTGCTGCTCAAACACACATGAAGAGACTAGTGGCAGTGCTTTTGCTTGTGGCAATAAGCACTGCTGTGGAAAGCAAGGTAGAAGGCAATGGTGGACCATGCAAACAGAATGCATTGAATGCTAGGCCTCACAGTGTGTCGATCTTGGAGTTTGGGGCGGTTGGAGACGGAATAACACTGAACACAGTTGCGTTCCAAAACGCAATATTTTATCTCAAGTCATTTGCTGACAAAGGGGGTGCCCAACTATATGTTCCATCTGGCACATGGCTTACTGGGAGTTTTATCCTCACCAGTCACCTCACTCTGTTCCTTGAGAGAGGCGCTACCATCATTGCATCTCAGGATTATTCTCATTGGGATGTAGTGGATTCCCTCCCTTCTTATGGTAGAGGAATTGGGAGATATCGCAGCTTAATCTATGGACAGAATTTAAGCGATGTGGTAGTTACAGGTGATAATGGAACAATAGACGGGCAAGGTTCTATCTGGTGGAAGCTGTTCAGTTCTCATTCCTTAAACTACAGTCGACCAAATCTGATAGAATTTGTTGATTCTGTTGATGTCATAATTTCCAATTTGACTTTTCTTGACTCTCCAGCTTGGGACATCCATCCAGTATATTGCAGTAACGTTCAAATTCAAAACATAACTTCTCGTGCACCAGCTGAATCCCCTTGTACAAGTGGTATAGTTCCAGATTCCTCTCAGTATGTATGCATCGAGAACAGTAACATTAGCACTGGTCATGATGCAATTGTGTTGAAGAGTGGTTGGGATCAGTATGGAATTGCCTATGGAAAACCAACCTCCTGTGTCCACATCAGCAACGTTTACCTACAATCATCATCAGGTGCTGGCTTGGCATTTGGGAATGAGATGTCTGGGGGAATATCTGATATTGTTGCAGAAAAGCTTCATGTACTCAACTCGTCTATAGGCATTGAAGTGAAGACAACTAGGGGCAGAGGTGGCTATATGAAAGGCATCTCCATTTCTGATGCAGAATTGGAAAATATTCACTTGGGAATAAGCATGACAGGATACTCCGGTTTCCATCCAGATGACAAGTATGACACGAGTGCACTTCCACTTGTGGGTAGCATTACTTTCAAGAATGTGATAGGTGTAAATATTCATGTTGCTGGGAATTTTTCAGGAATAGTTGAATCACCATTCTCAACTATATGTCTTTTAAATGTGACTTTTTCTCTCAGTTCTGAGCCATCTCCTTCATGGTTCTGTTCTAATGTAATTGGTTTCTCCGAGGAGGTGATTCCTGAGCCATGTCCTGATCTACAGAGCTCGTATTCCAAGTTTTCCTTTTCATGCTTTCCTTCCCTATTTCCACTCTTTGATAATGTCTCAGGTTATTTGGATCAAGAATTATAG 1449 0.4244 MQLFLHWIQNFLAPLPFQLVAAQTHMKRLVAVLLLVAISTAVESKVEGNGGPCKQNALNARPHSVSILEFGAVGDGITLNTVAFQNAIFYLKSFADKGGAQLYVPSGTWLTGSFILTSHLTLFLERGATIIASQDYSHWDVVDSLPSYGRGIGRYRSLIYGQNLSDVVVTGDNGTIDGQGSIWWKLFSSHSLNYSRPNLIEFVDSVDVIISNLTFLDSPAWDIHPVYCSNVQIQNITSRAPAESPCTSGIVPDSSQYVCIENSNISTGHDAIVLKSGWDQYGIAYGKPTSCVHISNVYLQSSSGAGLAFGNEMSGGISDIVAEKLHVLNSSIGIEVKTTRGRGGYMKGISISDAELENIHLGISMTGYSGFHPDDKYDTSALPLVGSITFKNVIGVNIHVAGNFSGIVESPFSTICLLNVTFSLSSEPSPSWFCSNVIGFSEEVIPEPCPDLQSSYSKFSFSCFPSLFPLFDNVSGYLDQEL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02508 482 Gene3D - 53 440 IPR012334 -
Spst1g02508 482 SUPERFAMILY Pectin lyase-like 52 453 IPR011050 -
Spst1g02508 482 Pfam Glycosyl hydrolases family 28 156 436 IPR000743 GO:0004650|GO:0005975
Spst1g02508 482 PANTHER PECTIN LYASE-RELATED 33 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02508 Spst-Chr1 33758484 33761403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02508 26 464 Glycoside Hydrolase AT3G16850 60.360 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02508 - - gmx:100787190 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02508 1 33758484 33761403 Spst1g02508 1 33758484 33761403 ECH