Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02502 ATGGTCAAAACGGCGTCGTCCCCTTCTTCTTCTCCGGTCACCATAACGGTGTCGTCCGGAGGACGACGCAGAAGCATGGGACTAACCAGTCCTGTTTCACGCGCCTCAGTCTGTACCAACAACCCCACTTCCCCTCTCCGAGCTTCTGGCGGCGGTAGGAGACTCTCCGGCGCGGGCGCTTCCAAAGACGGTGGTATTGAAGAAATCAACTCCGAATGCGTGACGTATACCGTCCACATTCCTCCGACGCCCGACCGCAAGCCCCTGACTACCTCGGAAGACGGAAAGGGCAGCACGAGTTTCATCTCCGGCACGATCTTCACCGGAGGCAACAACTCCGTGACTCGCGGCCACGTCATCGAATCCTCCATGGAAACCGAAGCGCTGTCGAAATCCTCGTCAGTTTGCGGAATGAAGGGTTGCGGGGAGGAAGCGATGAAAGGAAGGCCATGTAGTACGTGCGAATGCGGGTTCAAGATCTGCAGGGGGTGTTACTTGGAGTTTGGCGAGAACAAAGGAGGAAGAAAGTGTCCTGGGTGCAAAGAGCCTTATAAGTATGTGAGTGATGATGAAGATGATGGTAGTGATGAAGAGGGAGAGGGATCTGAGGGTGAGGATCAGCCTCTGCCTCTGCCTTCTATGGCGGAGTTTAAGTTGGACAAGAGGCTTTCTCTAGTGAAGTCCTTCAAAGCGCAGAATCATCTTCCTGACTTTGACCACACGCGATGGCTGTTTGAGACGAAGGGGACCTATGGCTATGGAAACGCTGTGTGGCCTAAAGATGGTTACGGTGCTAACGGGTTTGAACCCCCTCCGGAGTTTGCAGAGAAAGTGAGGAGACCCTTGACCCGCAAGGTTGGAGTTTCAGCTGCTATTCTCAGTCCTTATAGGTTGCTTATTATGCTTCGTTTTGCTGCCTTGGGTTTATTTCTTACATGGAGGATAAAACATCCGAACCATGAAGCCATTTGGTTATGGGCAATGTCCATAACCTGTGAAATATGGTTTGCATTTTCGTGGATTCTTGATCAACTTCCTAAACTATGTCCTGTGAATAGAGTAACTGATCTATCTGTTCTGAAGGAGCGATTTGAGTCTCCAAACCTGCGGAACCCGAAAGGAAGATCTGATCTACCAGGAATTGACGTGTTTGTTTCCACCGCAGATCCTGAAAAGGAGCCTCCTCTTGTCACTGCCAATACCATTCTCTCGATCCTTGCAGTTGATTATCCAGTGGAGAAGGTTGCGTGTTACTTGTCTGATGATGGTGGAGCTCTGCTGACATTTGAAGCTCTAGCTGAGACTGCTAGGTTTGCTAGAATTTGGGTTCCTTTCTGTCGGAAGCACCAAATACAGCCGCGAAATCCTGAAGCTTATTTTGGGCAGAAGCGTGATTTTCTAAAGAATAAGGTCCGGTTGGACTTTGTAAGAGAGAGAAGAAGAGTGAAGCGGGAATATGATGAGTTCAAAGTGAGGATAAACTCCTTGCCGGAATCCATTAGGAGAAGATCCGATGCTTACAATGCTCATGAGGAGCTCCGAGCCAGTAAGAAACGGATGGAAACAGGTGCCAATGTCTCCGAACCCATTAAGGTTCCTAAAGCTACGTGGATGTCCGATGGTTCTCATTGGCCAGGAACTTGGGTATCAGCAGAACAAGACCACTCAAGGGGGGACCATGCTGGTATAATTCAGGCAATGTTAGCTCCACCAAATGCAGAACCGGAATTTGGTGCAGAAGTTAATGGGGATAACTTGATTGATACAACCGATGTTGATATTAGGTTGCCCATGCTTGTTTATGTGTCTCGTGAAAAGCGGCCGGAATATGACCACAACAAGAAAGCAGGGGCAATGAATGCTCTTGTTCGCACCAGTGCCATCATGTCCAATGGACCATTCATTCTGAATCTTGATTGTGATCATTACATCTACAACTCCTTGGCTCTAAGAGAAGGAATGTGCTTTATGCTTGACAGGGGTGGTGATAGGATATGCTACGTTCAGTTCCCTCAACGGTTTGAGGGCATTGACCCCAGTGACAGATATGCAAATCACAACACTGTGTTCTTTGATGTGAGCATGAGAGCTCTTGATGGCTTACAAGGCCCCATGTACGTAGGAACAGGCTGCATATTCAGAAGAACAGCTCTGTATGGATTTAGCCCTCCTAGAGCCACGGAACATCATGGCTGGCTTGGCAGGAGAAAAATTAAGCTGTTTCTGAGAAAGCCAAAGATTTCAAAAAAGGAAGATGATGAAGTTGCTGTGATGATAAATGGTGACCACAACGATGATGATGCAGACATAGAGTCCTTGCTTCTTCCCAAAAGGTTTGGAAACTCATCTTCTCTTGCTGCATCCATTCCTGTGGCGGAATACCAAGGAAGGTTGCTTCAAGATTTGCAAGGAAAGGGAACACATGGAAGGCCAATGGGTTCTCTTGCTGTGCCTCGTGAGCCATTGGATGCAGCCACTGTTGCTGAAGCAATTAGTGTGATATCTTGTTCCTATGAGGAGAAAACTGAATGGGGCAAAAGAGTGGGGTGGATATATGGTTCAGTTACAGAAGATGTGGTGACTGGTTACAGAATGCACAATAGAGGTTGGAGATCAGTGTACTGTGTGACCAAAAGGGATGCTTTTAGAGGAACAGCTCCAATCAACTTGACAGACAGGCTACACCAAGTGCTTCGATGGGCAACAGGTTCTGTTGAGATCTTCTTCTCAAGGAACAATGCGTTGTTAGCAAGTCCTAGAATGAAGTTCCTGCAGAGGGTGGCATATTTCAATGTAGGAATGTACCCTTTCACTTCAATGTTTTTGATCGTCTATTGCTTTCTACCTGCAGTGTCCCTATTTTCGGGTCAGTTTATAGTCCAATCCCTCAGCGTAACTTTTCTAGTGTTCTTGTTGGGGATCACGATCACACTGTGCTTGCTTGCACTGCTCGAGATCAAGTGGTCAGGAATCACTCTACATGATTGGTGGAGAAATGAACAATTCTGGTTAATTGGTGGAACAAGTGCACACCCTGCTGCTGTTTTACAAGGGTTGTTGAAGGTCATAGCAGGAGTGGACATATCATTCACCTTGACCTCAAAGTCAGCTACTCCAGAAGGTGGAGATGATGAGTTTGCTGATCTTTATGAGGTGAAATGGAGCTTTCTAATGGTCCCTCCAATTACTATTATGATGGTGAACGCCATTGCTATTGCTGTAGGGGTAGCTAGGACTATGTACAGTCCCTTTCCACAGTGGAGCAGACTAGTAGGAGGTGTGTTTTTCAGCTTCTGGGTCTTGTGCCATCTTTATCCATTTGCAAAGGGCCTCATGGGAAGGAGAGGGAAGGTTCCTACCATCATCTATGTTTGGTCTGGATTACTCTCCATTATTATCTCTTTGCTTTGGGTATACATAAACCCTCCTTCAGGCAGAGTACAAGATTACATGAATTTCCAATTCCCTTGA 3471 0.471 MVKTASSPSSSPVTITVSSGGRRRSMGLTSPVSRASVCTNNPTSPLRASGGGRRLSGAGASKDGGIEEINSECVTYTVHIPPTPDRKPLTTSEDGKGSTSFISGTIFTGGNNSVTRGHVIESSMETEALSKSSSVCGMKGCGEEAMKGRPCSTCECGFKICRGCYLEFGENKGGRKCPGCKEPYKYVSDDEDDGSDEEGEGSEGEDQPLPLPSMAEFKLDKRLSLVKSFKAQNHLPDFDHTRWLFETKGTYGYGNAVWPKDGYGANGFEPPPEFAEKVRRPLTRKVGVSAAILSPYRLLIMLRFAALGLFLTWRIKHPNHEAIWLWAMSITCEIWFAFSWILDQLPKLCPVNRVTDLSVLKERFESPNLRNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKVACYLSDDGGALLTFEALAETARFARIWVPFCRKHQIQPRNPEAYFGQKRDFLKNKVRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRASKKRMETGANVSEPIKVPKATWMSDGSHWPGTWVSAEQDHSRGDHAGIIQAMLAPPNAEPEFGAEVNGDNLIDTTDVDIRLPMLVYVSREKRPEYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVSMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWLGRRKIKLFLRKPKISKKEDDEVAVMINGDHNDDDADIESLLLPKRFGNSSSLAASIPVAEYQGRLLQDLQGKGTHGRPMGSLAVPREPLDAATVAEAISVISCSYEEKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKFLQRVAYFNVGMYPFTSMFLIVYCFLPAVSLFSGQFIVQSLSVTFLVFLLGITITLCLLALLEIKWSGITLHDWWRNEQFWLIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEGGDDEFADLYEVKWSFLMVPPITIMMVNAIAIAVGVARTMYSPFPQWSRLVGGVFFSFWVLCHLYPFAKGLMGRRGKVPTIIYVWSGLLSIIISLLWVYINPPSGRVQDYMNFQFP 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02502 1156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 207 IPR013083 -
Spst1g02502 1156 MobiDBLite consensus disorder prediction 1 47 - -
Spst1g02502 1156 Pfam Cellulose synthase 381 1147 IPR005150 GO:0016020|GO:0016760|GO:0030244
Spst1g02502 1156 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 588 730 IPR029044 -
Spst1g02502 1156 Pfam RING/Ubox like zinc-binding domain 146 185 - -
Spst1g02502 1156 FunFam cellulose synthase-like protein D3 586 723 - -
Spst1g02502 1156 MobiDBLite consensus disorder prediction 1 62 - -
Spst1g02502 1156 SUPERFAMILY Nucleotide-diphospho-sugar transferases 396 949 IPR029044 -
Spst1g02502 1156 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 280 1126 - -
Spst1g02502 1156 MobiDBLite consensus disorder prediction 189 204 - -
Spst1g02502 1156 MobiDBLite consensus disorder prediction 188 211 - -
Spst1g02502 1156 SUPERFAMILY RING/U-box 132 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02502 Spst-Chr1 33688823 33693091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02502 61 1156 Glycosyltransferase AT3G03050 67.294 0.0 1522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02502 K00770 - gmx:100804687 2136.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02502 1 33688823 33693091 Spst1g02502 1 33688823 33693091 ECH