Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02462 ATGGGTACGGAGAGAAAGAGGAAGGTGAGCTTGTTTGACGTCGTAGACGATTCTGTGGCGAAGATGGCGAAAACTAATGGCGGCGCCGTGGCCAATACTCTCATCAATCGCTGGAACGCAAGGCCTTACTCTCAAAGGTACTTCGAGATTTTGGAGAAGAGAAAAACCCTCCCCGTGTGGCACCAGAAAGAAGAGTTCTTACAAGTTCTAAAAGATAACCAGACTTTGATTCTTGTCGGTGAAACTGGTAGTGGCAAAACCACTCAGATTCCTCAGTTTGTATTAGATGCTGTCGAGTTAGAGACACCGGATAAACGTAGGAAGATGATGATTGCGTGCACTCAGCCTCGGAGAGTGGCTGCAATGTCTGTTTCGCGTCGTGTGGCTGAAGAGATGGATGTAACTATTGGCGAAGAGGTTGGTTATAGTATCAGATTTGAAGACTGCAGTAGTGCGAGGACAGTTTTGAAGTATCTTACAGATGGTATGCTCTTAAGAGAAGCAATGACAGATCCACTTTTGGAACGGTACAAGGTTATTATTCTTGATGAGGCTCATGAGAGGACTTTGGCCACTGATGTGCTATTTGGCCTTCTGAAAGAAGTGCTTAAAAATAGGCCTGACTTGAAGTTGGTTGTTATGAGTGCTACTCTTGAAGCTGAAAAGTTTCAGGGCTATTTTTTTGGTGCCCCTCTCATGAAAGTTCCTGGAAGGCTACATCCTGTTGAAATTTTCTATACTCAGGAGCCTGAAAGGGATTACTTGGAGGCTGGCATTAGGACAGTGGTACAAATACACATGTGTGAACCACCTGGAGATATACTTGTATTTCTCACTGGAGAGGAAGAGATAGAAGATGCTTGCCGTAAAATAACAAAAGAAATTTCTAATCTGGGAGATCAGGTGGGTCCTGTCAAAGTGGTACCCCTTTATTCTACCCTTCCTCCAGCTATGCAGCAGAAGATTTTTGAGCCACCGCCACCGCCACTGAAGGAGGGTGGACCTCCTGGTAGGAAGATTGTGGTATCAACAAACATAGCGGAAACTTCCTTGACAATTGATGGTATTGTTTATGTCATTGACCCTGGTTTTGCTAAGCAGAAAGTCTATAACCCACGAGTTCGTGTGGAGTCTTTATTAGTATCACCAATATCAAAAGCCAGTGCACATCAGAGATCAGGGCGTGCTGGAAGAACGCAACCTGGGAAATGCTTTAGACTTTACACTGAGAGAAGTTTCAACAATGATCTTCAGCCACAGACCTATCCTGAAATTTTACGATCAAATCTCGCCAATACAGTTCTTACATTGAAGAAACTGGGCATAGATGATTTAGTGCATTTTGATTTCATGGACCCGCCTGCTCCTGAGACCTTAATGCGAGCATTGGAAGTGTTGAATTACTTGGGTGCACTGGATGATGATGGTAACTTAACAAAGCTGGGTGAGATTATGAGTGAATTTCCCTTGGACCCACAGATGTCGAAGATGCTCGTTGTCAGTCCTGAATTCAACTGTTCAAATGAGATTCTGTCAGTTTCTGCCATGCTTTCAGTACCCAATTGCTTTGTCCGGCCTAGGGAGGCACAAAAAGCTGCGGATGAAGCTAAAGCTAGGTTCGGGCACATTGACGGGGATCATCTGACGCTGTTGAATGTCTATCATGCGTACAAGCAAAATAATGAGGATCCCTCTTGGTGCTATGATAACTTTGTTAATCATCGGGCATTGAAAGCAGCTGATAATGTTAGACAACAATTAGTGCGAATCATGACCCGGTTTAATCTGAAACAATGCAGCACTGACTTTAATAGCCGCGACTACTATGTCAACATAAGAAAAGCTATGCTAGCTGGGTATTTCATGCAGGTAGCTCATCTGGAGCGTACAGGACACTACTTGACAGTGAAAGACAACCAGGTGGTGCATTTGCATCCTTCAAATTGCCTGGACCACAAGCCTGAATGGGTAATTTATAATGAATATGTTCTTACCAGTCGGAATTTTATTCGTACTGTTACAGACATTCGAGGGGAATGGTTGGTTGATATAGCTCCACATTACTATGATTTGTCTAACTTCCCCCAATGTGAGGCAAAGCGTGTTCTTGAGAAACTTTACAAGAAGCGAGAAAAGGAGAAGGATGAAATGAGGAGCCGCAGATAA 2166 0.4381 MGTERKRKVSLFDVVDDSVAKMAKTNGGAVANTLINRWNARPYSQRYFEILEKRKTLPVWHQKEEFLQVLKDNQTLILVGETGSGKTTQIPQFVLDAVELETPDKRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRLHPVEIFYTQEPERDYLEAGIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEISNLGDQVGPVKVVPLYSTLPPAMQQKIFEPPPPPLKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKAADNVRQQLVRIMTRFNLKQCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLEKLYKKREKEKDEMRSRR 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02462 721 SMART helicmild6 282 400 IPR001650 -
Spst1g02462 721 FunFam Predicted protein 251 420 - -
Spst1g02462 721 Coils Coil 700 720 - -
Spst1g02462 721 Gene3D - 10 238 IPR027417 -
Spst1g02462 721 CDD SF2_C_RHA 240 408 - -
Spst1g02462 721 Gene3D - 445 554 - -
Spst1g02462 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 633 IPR027417 -
Spst1g02462 721 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 67 236 IPR014001 -
Spst1g02462 721 PANTHER ATP-DEPENDENT RNA HELICASE 44 693 - -
Spst1g02462 721 SMART ha2_5 461 551 IPR007502 GO:0004386
Spst1g02462 721 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 445 553 - -
Spst1g02462 721 Pfam Helicase conserved C-terminal domain 267 399 IPR001650 -
Spst1g02462 721 FunFam Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 14 238 - -
Spst1g02462 721 CDD DEXHc_DHX15 45 235 IPR044756 GO:0003724|GO:0005524
Spst1g02462 721 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 612 688 IPR011709 -
Spst1g02462 721 Pfam Helicase associated domain (HA2) 462 550 IPR007502 GO:0004386
Spst1g02462 721 SMART ultradead3 54 245 IPR014001 -
Spst1g02462 721 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 261 441 IPR001650 -
Spst1g02462 721 Gene3D - 239 421 IPR027417 -
Spst1g02462 721 Pfam DEAD/DEAH box helicase 63 221 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02462 Spst-Chr1 33275124 33279940 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02462 K12820 - gmx:100817506 1394.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02462 1 33275124 33279940 Spst1g02462 1 33275124 33279940 ECH