Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02446 ATGTTTAGGTTGCAGGGTAAGGTGGCTATTGTGACCGGTGGAGCCACCGGAATAGGAGCAGAAACAGTGAAGATATTCGTAGAAAACGGAGCATCGGTGGTCATAGCAGACATAAAGGAGGAATTAGGTCAGAGTTTGGCAATTTCAATTGGCTCGGAGAAAGTGAGTTATCGCCATTGTGATGTCAGAGACGAGAATCAAGTTTCGGAAACAGTAGCTTTCGCAGTGGAGAAATATGGGAGCTTAGACATCATGTTCAGCAACGCTGGCGTCGCAGGATCTTATTTAACCATACTAGACTTGGATCTGAACAAATTCGACGACACCATGGCTGTTAATGTTCGAGGTGCAGCTGCAATGATCAAGCACGCGGCACGTGTCATGGTTGCTACGAAAACGCGTGGATCGATAATTTGCACTGCCAGCGTGGCTTGTTCCTTCGGCGGAAGCGCGGGCCATGAATACACCACATCCAAACACGGCGTTGTTGGGCTTGTTCGATCGGCGTGTGGCGAGCTTGGAGCTTATGGGATAAGAGTGAATTCCATCTCGCCTTATGCACTTGCCTCGCCTCTTACTTGCGACGCACTCGATGTGGGACCTGCTGAAGTTGAAGCTATGGCACATGGTTCTGCTATTTTGGAGGGAATTACGTTGAAGGCTAATCATATTGCGGAAGCTGCTCTGTTTCTTGCCTCTGATGAATCCATTTATATCAGTGGCCACAACTTGGCCGTCGATGGAGGTTTCTCCTCCGTTAACCGCTGGCTTCCTAGGATTCAAAAGTAA 789 0.4867 MFRLQGKVAIVTGGATGIGAETVKIFVENGASVVIADIKEELGQSLAISIGSEKVSYRHCDVRDENQVSETVAFAVEKYGSLDIMFSNAGVAGSYLTILDLDLNKFDDTMAVNVRGAAAMIKHAARVMVATKTRGSIICTASVACSFGGSAGHEYTTSKHGVVGLVRSACGELGAYGIRVNSISPYALASPLTCDALDVGPAEVEAMAHGSAILEGITLKANHIAEAALFLASDESIYISGHNLAVDGGFSSVNRWLPRIQK 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02446 262 Pfam Enoyl-(Acyl carrier protein) reductase 13 251 - -
Spst1g02446 262 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 IPR002347 -
Spst1g02446 262 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 IPR002347 -
Spst1g02446 262 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 IPR002347 -
Spst1g02446 262 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Spst1g02446 262 PRINTS Glucose/ribitol dehydrogenase family signature 129 145 IPR002347 -
Spst1g02446 262 PRINTS Glucose/ribitol dehydrogenase family signature 176 193 IPR002347 -
Spst1g02446 262 PRINTS Glucose/ribitol dehydrogenase family signature 214 234 IPR002347 -
Spst1g02446 262 PRINTS Glucose/ribitol dehydrogenase family signature 155 174 IPR002347 -
Spst1g02446 262 PRINTS Glucose/ribitol dehydrogenase family signature 80 91 IPR002347 -
Spst1g02446 262 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 253 IPR036291 -
Spst1g02446 262 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 142 170 IPR020904 GO:0016491
Spst1g02446 262 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3 255 - -
Spst1g02446 262 Gene3D - 1 259 - -
Spst1g02446 262 FunFam Short-chain dehydrogenase reductase 1 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02446 Spst-Chr1 33165247 33166035 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02446 4 249 Acyl Lipid Metabolism Gene Families AT3G55290 30.233 5.50e-22 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02446 - - gmx:100798299 379.407