Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02445 ATGATATCAATCATGTCCAAGCAAAGGTTGCAGGGTAAGGTGGCTATCGTCACTGGTGGAGCCACCGGAATAGGAGCAGAGACGGTGAGGATATTCTTAGAAAACGGAGCATCAGTGGTCATGGCAGACGTCAAGGACGAACTAGGTCACAGCTTCGCAGCTTCATTTAGCTCAGAGAAAGTGAGTTACCGCCACTGTGATGTGAGAAACGAGAAGCACGTTGAGGAAACAGTAGCTTTCGCGGTGGAGAAATATGGGAGCTTAGACATCATGTTCAGCAACGCTGGCATCGCGGGTCCTCTGTCAAGCATTCTAGCCTTCGATCTCAACAAATTTGACAACACCATAGCCGTGAATCTTCGCGGTGCAGCAGCATTCATCAAGCACGCGGCGCGTGTCATGGTGGCGAGGAAGACACGTGGATCCATAATCTGCACGGCGAGCGTGGCTGGATCGTTCGGCGGATGCGCAGGTCATGATTACACGGCATCCAAACATGGCCTTATTGGGCTTGTTCGGTCGACGTGTAGCGAGCTCGGAGGTTATGGCATACGAGTGAATTCCATTTCGCCTTATGCAGTTGCCACGCCTCTTACCTGTGAAGCTTTGGATATGGAGGATGGTGAAGTTGAAGCTGCAGGGCATGCGTTAGCGAATCTGCATGGAATTACGTTGAAGGGTTGTCATATTGCAGAAGTTGCTCTGTTTCTTGCTTCTGAAGAATCGGCTTATATCAGTGGGCATAACTTGGTCGTCGATGGAGGTTTCTCCGTCGTTAATCGAGGTCTTCCATCTATTAAAAATTAA 807 0.4969 MISIMSKQRLQGKVAIVTGGATGIGAETVRIFLENGASVVMADVKDELGHSFAASFSSEKVSYRHCDVRNEKHVEETVAFAVEKYGSLDIMFSNAGIAGPLSSILAFDLNKFDNTIAVNLRGAAAFIKHAARVMVARKTRGSIICTASVAGSFGGCAGHDYTASKHGLIGLVRSTCSELGGYGIRVNSISPYAVATPLTCEALDMEDGEVEAAGHALANLHGITLKGCHIAEVALFLASEESAYISGHNLVVDGGFSVVNRGLPSIKN 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02445 268 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 258 IPR036291 -
Spst1g02445 268 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 148 176 IPR020904 GO:0016491
Spst1g02445 268 PRINTS Glucose/ribitol dehydrogenase family signature 161 180 IPR002347 -
Spst1g02445 268 PRINTS Glucose/ribitol dehydrogenase family signature 14 31 IPR002347 -
Spst1g02445 268 PRINTS Glucose/ribitol dehydrogenase family signature 86 97 IPR002347 -
Spst1g02445 268 PRINTS Glucose/ribitol dehydrogenase family signature 182 199 IPR002347 -
Spst1g02445 268 PRINTS Glucose/ribitol dehydrogenase family signature 220 240 IPR002347 -
Spst1g02445 268 PRINTS Glucose/ribitol dehydrogenase family signature 135 151 IPR002347 -
Spst1g02445 268 Gene3D - 2 263 - -
Spst1g02445 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 IPR002347 -
Spst1g02445 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 IPR002347 -
Spst1g02445 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 IPR002347 -
Spst1g02445 268 Pfam Enoyl-(Acyl carrier protein) reductase 19 257 - -
Spst1g02445 268 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 6 261 - -
Spst1g02445 268 FunFam Short-chain dehydrogenase reductase 4 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02445 Spst-Chr1 33143465 33144393 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02445 10 264 Acyl Lipid Metabolism Gene Families AT3G55290 29.771 7.80e-22 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02445 - - gmx:100798299 443.351