Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02444 ATGTGTTCTAGGTTGGAGGGTAAGGTGGCTCTTATCACCGGGGCAGCAAGTGGTATTGGAGAAGAGACAGTGAGATTGTTCGCGGAACATGGAGCAGTTATTGTTGCAGCAGATATTCAAGATGAGCAAGGTCAACGACTTGCTGCTTCAATAGGTTCAGATAGAGTGACTTATCACCATTGCGATGTGAGAGATGAAAACCAAGTTGAAGAAACCGTCAATTTCACTTTGGAAAAACATGGTCGCATGGATATTTTGTTCAGTAACGCAGGAATAATAGGTTCTCTATCTGGGATCCTTGACCTTGATCTGAATGAGTTTGACAACACCATGGCCACAAATGTTCGCGGTGTAGCCGCCACAATTAAACACTCAGCACGTGCCATGGTTGCCAAAAGCATCCGTGGATCCATCATATGCACCACCAGTGTGGCTGCCACAGTTGGTGGAACGGGTCCTCATGCTTATACCACATCAAAACATGCTCTTATGGGGTTGATGAAATCAGCTTGTAGTGAACTTGGAGCATATGGAATAAGAGTTAACAGCATATCCCCTTTTGGAGTAGCCACACCTCTTGCATGCAAGGCTTTCAACTTTGAACCTGAGCAAGTTGAAGCTAATAGCTGCTCACAGGCTAATCTCAAGGGTGTGGTATTGAAGGCTAAACATGTAGCAGAAGCAGCCTTGTTTCTTGCTTCTGATGAAGCAATTTACATCAGTGGTCACAACTTGGCGGTGGATGGTGGCTTCTCTGTGGTTAATAGAAGTTATACTTTCACACCTGTTAACATGTAG 798 0.4474 MCSRLEGKVALITGAASGIGEETVRLFAEHGAVIVAADIQDEQGQRLAASIGSDRVTYHHCDVRDENQVEETVNFTLEKHGRMDILFSNAGIIGSLSGILDLDLNEFDNTMATNVRGVAATIKHSARAMVAKSIRGSIICTTSVAATVGGTGPHAYTTSKHALMGLMKSACSELGAYGIRVNSISPFGVATPLACKAFNFEPEQVEANSCSQANLKGVVLKAKHVAEAALFLASDEAIYISGHNLAVDGGFSVVNRSYTFTPVNM 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02444 265 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 254 IPR036291 -
Spst1g02444 265 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3 257 - -
Spst1g02444 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 IPR002347 -
Spst1g02444 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 IPR002347 -
Spst1g02444 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 IPR002347 -
Spst1g02444 265 FunFam Short-chain dehydrogenase reductase 1 256 - -
Spst1g02444 265 Pfam Enoyl-(Acyl carrier protein) reductase 14 252 - -
Spst1g02444 265 Gene3D - 1 259 - -
Spst1g02444 265 PRINTS Glucose/ribitol dehydrogenase family signature 130 146 IPR002347 -
Spst1g02444 265 PRINTS Glucose/ribitol dehydrogenase family signature 215 235 IPR002347 -
Spst1g02444 265 PRINTS Glucose/ribitol dehydrogenase family signature 9 26 IPR002347 -
Spst1g02444 265 PRINTS Glucose/ribitol dehydrogenase family signature 81 92 IPR002347 -
Spst1g02444 265 PRINTS Glucose/ribitol dehydrogenase family signature 156 175 IPR002347 -
Spst1g02444 265 PRINTS Glucose/ribitol dehydrogenase family signature 177 194 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02444 Spst-Chr1 33138860 33139657 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02444 5 262 Miscellaneous Gene Families AT2G29150 33.080 8.07e-24 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02444 - - gmx:100777244 476.863