Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02434 ATGGGCAAAGAGGCTGGGCCCAATGGGCTTATAGTAAAGCAGAGAAGTGGACTTGCCTGCGGAAACTCTTCATTTCATCTCAGCGACAGAGATAGAAAAGCATTAACAATGAGATTTCATGGGACCTTTATTTTTTGTCGTTGTCTTTCTCGTTTGCCAAAGCGATTCGATTCACAGTCCGAATTCCCACACCCGGATTTCCGGCGTCAAGCTCCATTTTTCCTTCGTTCGTATTCTTCCGGTATTCCTTTGTTCAATCTATTTATGTATTCAGAAGCGCAAGCTCAACTGTCACCGGAGCTCTTGAACATAATGGAAAAAAGACTCTCCGCTATTGAGTACAGGACTGCATGTCTCAACAAATTTCTAAATCAGCCAGAAGCATCGCCATCAGAATATGCAAAAGCTAACAAGGAGCTTCGGAAGCTAAGTGGTTCTGTGGACCTTATTAATGAATTGAGGACCAAACAGAAGGAAATTGATGGCTTGAAATCACTAATGGCAGAATCTTCTGAGGATAAGGACATGCTTAATATGGCTATAGAGGAAATGGGTCAGGCCATAGAAGAAGAAAGAAGACTGCAAAATTTGCTGCTGAAGTCATTACTTCCTAAGGATGATGCTGACGAAAGGGATTGCATTTTGGAGGTGCGAGCAGGCACTGGTGGGGAGGAGGCTTCCCTGTTTGCGATGGATATCTTTAGAATGTATGAGAAGTATGCTCTCAAGAAAGGCTGGAAGTTTGAAGTAGTAGATATAGCTCAATCTGATCTTAAAGGGTACAAGGAGGCTAGTTCAGCAATTGCAGGAGTTGGTGTTTTTGGGAAACTAAAATTTGAGAGTGGAATTCATAGAGTCCAGAGAGTTCCTGTGACAGAAAAGTTGGGACGTGTTCATACCAGTGCTGTTTCTGTTGCAATTCTTCCTCAGGCTGATGCGGTGGATGTTCAATTGAAGAATGAAGACGTAAGAATCGATACTTATAGATCTGGTGGTTCAGGTGGTCAGCATGCAAATACAACCAACAGTGCTGTTAGAGTAACCCACATTCCAACAGGGATTATGATTGCTATACAAGATGAGCGTTCTCAACATATGAACAAGGCCAAAGCTCTCAAGGTACTGTGTGCAAAACTATATGAAATGGAAAGGCTAAGACTTCATAGAAGTCGATCAAAGCTTCGATCGGAGCAGATTGGTAGTGGGGATAGATCTGAACGCATCAGAACATACAATTTTCCTCAGGGCAGAGTAACTGATCATAGAGTTGGTATCACTTATCACTCAGTAGATGATGTGATGCAAGGTGAAAATCTTGATGTCTTCATTGATGCCCTTCTATTGCAAGAAGAAATGGATGCAATTGCAACTTTTAGTTCGTCTCAGTAA 1389 0.4219 MGKEAGPNGLIVKQRSGLACGNSSFHLSDRDRKALTMRFHGTFIFCRCLSRLPKRFDSQSEFPHPDFRRQAPFFLRSYSSGIPLFNLFMYSEAQAQLSPELLNIMEKRLSAIEYRTACLNKFLNQPEASPSEYAKANKELRKLSGSVDLINELRTKQKEIDGLKSLMAESSEDKDMLNMAIEEMGQAIEEERRLQNLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAMDIFRMYEKYALKKGWKFEVVDIAQSDLKGYKEASSAIAGVGVFGKLKFESGIHRVQRVPVTEKLGRVHTSAVSVAILPQADAVDVQLKNEDVRIDTYRSGGSGGQHANTTNSAVRVTHIPTGIMIAIQDERSQHMNKAKALKVLCAKLYEMERLRLHRSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITYHSVDDVMQGENLDVFIDALLLQEEMDAIATFSSSQ 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02434 462 Gene3D - 319 407 - -
Spst1g02434 462 Pfam PCRF domain 114 305 IPR005139 GO:0006415
Spst1g02434 462 Gene3D - 213 438 - -
Spst1g02434 462 Gene3D - 99 207 - -
Spst1g02434 462 SMART PCRF_a_2 166 280 IPR005139 GO:0006415
Spst1g02434 462 Pfam RF-1 domain 313 422 IPR000352 GO:0003747|GO:0006415
Spst1g02434 462 PANTHER LD18447P 103 459 - -
Spst1g02434 462 Hamap Peptide chain release factor 1 [prfA]. 105 459 IPR004373 GO:0006415|GO:0016149
Spst1g02434 462 FunFam Peptide chain release factor 1 209 319 - -
Spst1g02434 462 FunFam Peptide chain release factor 1 311 406 - -
Spst1g02434 462 SUPERFAMILY Release factor 129 450 IPR045853 -
Spst1g02434 462 NCBIfam peptide chain release factor 1 107 459 IPR004373 GO:0006415|GO:0016149
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02434 Spst-Chr1 33039250 33043726 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02434 K02835 - gmx:100800412 699.893