Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst1g02422 | ATGGCTAACCCAACACAACCTAATGTTGGGTTCACTCCTGAGAGAGAGAGTGCAAACCTTGAGAAGAGTCCAATTCCGCCCCCTCCTAGTTTTGTAGCGTCACCACCTGGTTTTCCTTCATCAAAACTGCATTTACAGCCAGATCAAGCTCCTTCCCGTTCCGTTAAAACCCCTAACGTTTTATCACCAGCCAATGGGGTTGCCACAGGCGGTCCTGTTCCTCATTTGAGCACCCCTCCTGGACCTCCGGTTTTTACATCGCCTGTCCGTCCAGCTGCCGTTCCTTTTCGCACGTCACCTTCATCCCCCCAGCCTCTTGCATTTTCGTCAGCCTCTTCTTTGCCAACATCATCATCACCACTGCAATTTTCAAATGGATCGTTTGAGTTGCAGCACCAAGTTTCTGATAGTATGGACGACCAGGTTCCTGTTGCAGAGTCATCCTTTGTTCTTTTCTCAGCTCATAAGGTATTGAAACAGAAGAAACAAGCTAATGTGCCCAGTTTGGGTTTTGGGGCATTGGTCTCTCCTGGGAGGGAGGTTTCAATGGGCCCCCAGGTAATACAGCGTGATCCTCATCGCTGCCAAAGCTGTGGGGCTTATGCAAATATATATTGCAACATATTACTTGGATCAGGCCAGTGGCAGTGTGTTATATGTCGGAAATTGAATGGAAGTGAGGGGGAGTACATTGCACATAATAAGGAAGATCTTCACAGATTTCCGGAATTATCTTCAACCATGTTTGACTATGTTCAAACCGGGAACAAGAGACCAGGTTTTGTTCCAGTTTCTGATTCTAGAATGTCTGCCCCAATTGTTCTTGTTATAGATGAATGTTTAGATGAACCTCACCTGCACCATCTACAGAGTTCTTTGCATGCTTTTGTTGATTCTCTCCCACCAACAACGAGATTAGGAATTGTACTATATGGTCGTACTGTATCAGTGTATGATCTTTCAGAAGAGTCAATGGCATCTGCTGATGTGCTTCCTGGGGACAAATCACCAAGTCAAGAATCTTTGAAAACATTAATTTATGGTACTGGTATATACTTGTCACCAATGCATGCTTCACTGGCTGTAGCTCATTCCGTATTTTCATCATTGAGGGCATACAAGGTGAGTATACCAGAAGCTTCTCGAGATCGGTGTCTAGGAACTGCTGTTGAGGTTGCTCTTGCTATAATTCAGGGCCCATCTGCTGATCTGTCCAGGGGGGTGGTCAAAAGGTCAGGGGGAAATAGTAGAATTATTGTCTGTGCTGGTGGGCCGAACACTTATGGACCTGGATCTGTTCCTCATTCTTTTAGTCATCCTAATTATCCTTACATGGAGAAGACCGCAACTAAATGGATGGAAAATCTTGGTCATGAGGCTCATCGGCAGAATACTATAATTGATATTTTATGTGCTGGAACATGCCCTGTAAGAGTTCCTATCTTACATCCTCTTGCAAAAACATCAGGTGGAGTTTTTGTTCTCCATGACGATTTTGGGGAAGCCTTTGGTGTTAACTTGCAAAGGGCATCTGCCAGATCAGCAGGCTCTCATGGTTTGTTAGAATTGCGCACATCAGATGATATTGTCATTACTCAAGTTGTCGGCCCTGGGGAAGAGTCACATGTAGATACCCATGAAACATTTAAAAATGACACTGCCCTTTATATTCAAATGCTAAGTGTTGAAGAAACACAAAGTTTCTCTCTCTCCATGGAAACCGAAGGAGATATAAAAAGTGATTTTGTCTTTTTCCAATTTGCAATTCAATATTCAAATGTGTATCAAGCTGATGTGTCGAGGGTCATTACTGTTAGGCTGCCAACAGTAGATAGTATTTCTGCATATCTTGAGAGTGTTCAGGATGAAGTGGCCTCTGTCCTTATTGCAAAAAGAACCCTGTTACGAGCCAAAAACCAATCTGATGCAATTGATATGCGATCAACAATAGATGAAAGAATCAAGGATATTGCTCTAAAATTTGGTTCCCAATTACCTAAATCAAAACTTCATAGTTTCCCAAAGGAGCTTTCTCTCTTACCAGAGCTCCTTTTCCATCTCAGGAGAGGACCACTTTTGGGAAGCATTATTGGCCATGAAGATGAGAGGTCTGTGCTGAGGAATCTGTTTCTGAATGCATCCTTTGATCTATCACTCAGAATGGTGGCTCCCCGATGCTTAATGCACAGGGAGGGGGGAACTTTTGAGGAGCTACCGGCATATGATCTTGCTATGCAGTCTGACGCTGCTGTTGTACTTGACCATGGCACCGATGTCTTCATTTGGTTGGGTGCCGAACTTGCTGCTGATGAAGGAAGAAGTGCTGCTGCTCTAGCTGCTTGTAGGACATTGGCTGAAGAACTGACTGAGTACCGTTTTCCAGCTCCTCGCATCCTTGCATTTAAGGAGGGTAGTTCCCAGGCTCGATATTTTGTCTCTCGTCTCATTCCAGCTCACAAGGATCCTCCTTATGAGCAGGAGGCAAGATTCCCACAACTCAGGTCGTTGACATCTGACCAGCGGACAAAGCTGAAAGCAAGTTTTGTTCACTTCGATGATCCTAGTTTTTGTGAATGGATGCGAGGCTTGAAAGTGGTGCCACCACAACCAAGCTGA | 2616 | 0.445 | MANPTQPNVGFTPERESANLEKSPIPPPPSFVASPPGFPSSKLHLQPDQAPSRSVKTPNVLSPANGVATGGPVPHLSTPPGPPVFTSPVRPAAVPFRTSPSSPQPLAFSSASSLPTSSSPLQFSNGSFELQHQVSDSMDDQVPVAESSFVLFSAHKVLKQKKQANVPSLGFGALVSPGREVSMGPQVIQRDPHRCQSCGAYANIYCNILLGSGQWQCVICRKLNGSEGEYIAHNKEDLHRFPELSSTMFDYVQTGNKRPGFVPVSDSRMSAPIVLVIDECLDEPHLHHLQSSLHAFVDSLPPTTRLGIVLYGRTVSVYDLSEESMASADVLPGDKSPSQESLKTLIYGTGIYLSPMHASLAVAHSVFSSLRAYKVSIPEASRDRCLGTAVEVALAIIQGPSADLSRGVVKRSGGNSRIIVCAGGPNTYGPGSVPHSFSHPNYPYMEKTATKWMENLGHEAHRQNTIIDILCAGTCPVRVPILHPLAKTSGGVFVLHDDFGEAFGVNLQRASARSAGSHGLLELRTSDDIVITQVVGPGEESHVDTHETFKNDTALYIQMLSVEETQSFSLSMETEGDIKSDFVFFQFAIQYSNVYQADVSRVITVRLPTVDSISAYLESVQDEVASVLIAKRTLLRAKNQSDAIDMRSTIDERIKDIALKFGSQLPKSKLHSFPKELSLLPELLFHLRRGPLLGSIIGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDAAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELTEYRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRSLTSDQRTKLKASFVHFDDPSFCEWMRGLKVVPPQPS | 871 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst1g02422 | 871 | MobiDBLite | consensus disorder prediction | 97 | 113 | - | - | |
| Spst1g02422 | 871 | Gene3D | - | 182 | 245 | - | - | |
| Spst1g02422 | 871 | SUPERFAMILY | vWA-like | 273 | 505 | IPR036465 | - | |
| Spst1g02422 | 871 | MobiDBLite | consensus disorder prediction | 1 | 113 | - | - | |
| Spst1g02422 | 871 | Pfam | Sec23/Sec24 beta-sandwich domain | 518 | 609 | IPR012990 | - | |
| Spst1g02422 | 871 | SUPERFAMILY | Zn-finger domain of Sec23/24 | 185 | 256 | IPR036174 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Spst1g02422 | 871 | MobiDBLite | consensus disorder prediction | 45 | 64 | - | - | |
| Spst1g02422 | 871 | SUPERFAMILY | C-terminal, gelsolin-like domain of Sec23/24 | 724 | 864 | IPR036180 | - | |
| Spst1g02422 | 871 | Gene3D | Sec23/Sec24 helical domain | 610 | 730 | - | - | |
| Spst1g02422 | 871 | Gene3D | von Willebrand factor, type A domain | 272 | 517 | IPR036465 | - | |
| Spst1g02422 | 871 | Pfam | Sec23/Sec24 helical domain | 623 | 719 | IPR006900 | GO:0006886|GO:0006888|GO:0030127 | |
| Spst1g02422 | 871 | Gene3D | Severin | 738 | 837 | IPR029006 | - | |
| Spst1g02422 | 871 | FunFam | Protein transport protein SEC23 | 610 | 730 | - | - | |
| Spst1g02422 | 871 | Pfam | Sec23/Sec24 zinc finger | 192 | 230 | IPR006895 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Spst1g02422 | 871 | MobiDBLite | consensus disorder prediction | 75 | 89 | - | - | |
| Spst1g02422 | 871 | SUPERFAMILY | Helical domain of Sec23/24 | 622 | 722 | IPR036175 | GO:0006886|GO:0006888|GO:0030127 | |
| Spst1g02422 | 871 | FunFam | Protein transport protein SEC23 | 738 | 835 | - | - | |
| Spst1g02422 | 871 | CDD | gelsolin_like | 724 | 815 | - | - | |
| Spst1g02422 | 871 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 153 | 868 | IPR037364 | - | |
| Spst1g02422 | 871 | Pfam | Sec23/Sec24 trunk domain | 274 | 500 | IPR006896 | GO:0006886|GO:0006888|GO:0030127 | |
| Spst1g02422 | 871 | CDD | trunk_domain | 266 | 509 | - | - | |
| Spst1g02422 | 871 | FunFam | Protein transport protein SEC23 | 183 | 245 | - | - | |
| Spst1g02422 | 871 | SUPERFAMILY | beta-sandwich domain of Sec23/24 | 34 | 620 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst1g02422 | - | - | gmx:100781518 | 1612.05 |