Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02393 ATGGGTTGTTGGAATGGGTGTCTCAGAAGCATGGTGTTCATGGGTGCTTTTATGGTGGCCATGGTTGTTCAACATGTGGAGTGCGAGGAAGGTGGTGATCATGTTCATGACCCAGCCCAAAAATTAGTTCAGAATGGTGGCTTCGTTCAACGAAGTGGCACTAACTTTGTTCTGAACAACAAGCGTTTCTACTTCAACGGATTCAACGCTTACTGGTTAATGTATATGGCATCTGACCCATCCACAAGGCCCAAGGTCACTTCCGTTTTGCAACAAGCTTCCAGCCATGGCTTAACTGTTGCTAGAACTTGGGCCTTCAGTGATGGAGGTTACAGAGCCCTTCAGGTTTCTCCTGGTTCCTATGACGAGAAAGTATTCCGGGGATTGGACTTTGTGATATCAGAAGCTGGAAAAAATGGGGTTCGCTTGATACTGAGCTTGGTGAACAACTGGAAAGATTTTGGTGGGAAAAATCAGTACGTGGAATGGGTGAAGCAGCATGGTCAGTACGTGAACAGTGAAGATGATTTCTTTACGCATCCTGTTGCCAAGCAACACTACAAAAACCATATTAAGGCTGTGCTGACAAGAAAAAACACAATAACTGGGGTGGCGTTTAAGGACGATCCTGCCATATTTGCATGGGAACTTATGAATGAACCTCGTTCCCAACGCGACAACTCCGGAAAAGTTATTCAGGAATGGGTGATTGAGATGGCTGCATACGTCAAATCCATCGATAACAAACATATGCTTGAAATAGGACTGGAAGGGTTCTATGGTGAAACAATGCCCGGAAAAAAACAATTCAATCCTGGATACCAACTTATTGGCACTGATTTCATTTCTAACAACCTAGTTCACCAAGTCGATTTTGCTACCATGCATCTCTACCCTGAACAATGGATGCCAGGTTCAACTGAAACTGCTCAGGCTGCATTTGTTGACAAGTGGTTACAGACACACATTGAGGATGCGAAGAATGTTCTGGGGAAGCCTATTGTTGTTGGTGAGTTTGGGAAGTCTTGTAGGTCATATAGTGTGGCTGAAAGGGACAGTTACATGAGCAAAATGTATGATGCGATATACAGTAGTGCTAGTAGTGGGGGACCCTGTGCTGGAGGGCTTTTTTGGCAGCTCATGGCTCAAGGAATGGATGGTTTACGTGATGGTTATGAAGTTATCTTCCAGGACAGTCCTTCAACTACCAGAATTGTAGATCAGCAATCCCACAAAATGTCAAGTATTGCTTAA 1254 0.4434 MGCWNGCLRSMVFMGAFMVAMVVQHVECEEGGDHVHDPAQKLVQNGGFVQRSGTNFVLNNKRFYFNGFNAYWLMYMASDPSTRPKVTSVLQQASSHGLTVARTWAFSDGGYRALQVSPGSYDEKVFRGLDFVISEAGKNGVRLILSLVNNWKDFGGKNQYVEWVKQHGQYVNSEDDFFTHPVAKQHYKNHIKAVLTRKNTITGVAFKDDPAIFAWELMNEPRSQRDNSGKVIQEWVIEMAAYVKSIDNKHMLEIGLEGFYGETMPGKKQFNPGYQLIGTDFISNNLVHQVDFATMHLYPEQWMPGSTETAQAAFVDKWLQTHIEDAKNVLGKPIVVGEFGKSCRSYSVAERDSYMSKMYDAIYSSASSGGPCAGGLFWQLMAQGMDGLRDGYEVIFQDSPSTTRIVDQQSHKMSSIA 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02393 417 Gene3D Glycosidases 44 417 - -
Spst1g02393 417 Pfam Cellulase (glycosyl hydrolase family 5) 64 361 IPR001547 GO:0004553|GO:0071704
Spst1g02393 417 SUPERFAMILY (Trans)glycosidases 48 405 IPR017853 -
Spst1g02393 417 PANTHER - 13 416 IPR045053 GO:0004553
Spst1g02393 417 FunFam Mannan endo-1,4-beta-mannosidase 6 45 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02393 Spst-Chr1 32516120 32518423 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02393 11 416 Glycoside Hydrolase AT5G66460 53.431 1.47e-156 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02393 K19355 - gmx:778029 739.954