Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02392 ATGCATGATCTGACAAAAACAGCGAGCATTGGGAATAAGGATGCGGTTTTCGCTTTTCGTGTGAATTTAGAAATGATGGTGGCAAGTGAGCTACATGGATTTTCCATGTCCCTGGGGTCAAAGAAACCAACCTTCCACCATGACAAGAATTTGTCTTCCTCATTCTCTGGTAGCAGAGTGAACTTGCTTCAATCAAAGAATGTAGTATCTGGTTTTCCTCCAGGAAAATTCTTTAGTGTTACACAGAGAAACACAACCAGAAGATTTTTGGCTATGTCTACTCTTGCAGATGTTGCAAATGAATTTATGGCCCTTCAATCACCAATACTTACAGGAAGAGAAGCCAACCCAAAGACTGTTGCATCGATCATATTAGGTGGTGGAGCTGGAACTCGTCTATTCCCCCTAACTCAAAGAAGGGCTAAACCTGCTGTACCATTTGGAGGATGCTATAGGCTGGTCGACATACCGATGAGTAATTGTATTAATAGTGGAATTAACAAAATTTACGTCCTCACACAATTTAATTCTCAGTCCCTCAACCGCCACATTGCTCGAACATATAATTTGGGAGGTTGCATCAACTTTGGTGGTTTTGTTGAGGTATTGGCAGCAACTCAAACACCTGGTGAATCAGGAAAGAAATGGTTTCAGGGTACAGCCGATGCTGTAAGACAATTCCTTTGGTTGTTTGAGGATGCCGATCATAAAAATATAGAGAACATTCTGATATTGTGTGGTGATCAGCTCTATCGAATGGACTACATGGAAATTGTGCAGAAGCACATTAATTCATGTGCTGATATATCAGTATCTTGTCTCCCAGTGGATGGCAGTCGGGCCTCTGATTTTGGATTAGTGAAGGTTGATGAAAGAGGGCAGATATGCCAGTTCTTAGAAAAACCCAAGGGCGAATTATTAAGATCTATGCATGTAGATACGAGTATTTTTGGACTGTCGGCTCAAGAAGCAAGGAAACTTCCATACATTGCATCAATGGGTATATATGTGTTTAAAATAGATGTTCTGCTAAAAGTTCTCAGGGGCTGTTATCCTAATGCAAACGATTTTGGATCCGAGGTCATTCCATTGGCTGCAAGAGATTTTAATGTCCAGGCATGTCTTTTCAATGGTTATTGGGAAGATATTGGGACTATAAAATCTTTCTTTGATGCGAACTTGGCTCTTATGGACCAGCGGCCCAAGTTTCAGTTGTATGACCAGTCCAAGCCTATTTTTACATGTCCTCGGTTCCTACCACCAACTAAAATGGAGAAGTGTGAGGTAATTAACTCTTTAATTTCAGATGGTTGCTTTTTAAAAGAGTGCACAGTTGAACATTCCATCGTGGGAATTCGATCACGACTTGATTCTGGAGTGCAGATAAAGGATACCATGATCATGGGTGCTGACTATTACCAAACAGAGGCTGAAATAGCTTCTCTTTTAGCAGCGGGAAATGTTCCGATAGGCATTGGGAAAAATACCAAAATTGTGAATTGTATAATTGACAAAAACGCAAGAATTGGAAACAATGTAATTATTGCAAACAAAGACAATGTGCAGGAGGCAGACAGAGCATCAGAGGGGTTCTACATTCGATCAGGAATCATTGTGGTCTTGAAAGACTCTGAAATTACGAATGGTACAATTATTTAA 1659 0.4039 MHDLTKTASIGNKDAVFAFRVNLEMMVASELHGFSMSLGSKKPTFHHDKNLSSSFSGSRVNLLQSKNVVSGFPPGKFFSVTQRNTTRRFLAMSTLADVANEFMALQSPILTGREANPKTVASIILGGGAGTRLFPLTQRRAKPAVPFGGCYRLVDIPMSNCINSGINKIYVLTQFNSQSLNRHIARTYNLGGCINFGGFVEVLAATQTPGESGKKWFQGTADAVRQFLWLFEDADHKNIENILILCGDQLYRMDYMEIVQKHINSCADISVSCLPVDGSRASDFGLVKVDERGQICQFLEKPKGELLRSMHVDTSIFGLSAQEARKLPYIASMGIYVFKIDVLLKVLRGCYPNANDFGSEVIPLAARDFNVQACLFNGYWEDIGTIKSFFDANLALMDQRPKFQLYDQSKPIFTCPRFLPPTKMEKCEVINSLISDGCFLKECTVEHSIVGIRSRLDSGVQIKDTMIMGADYYQTEAEIASLLAAGNVPIGIGKNTKIVNCIIDKNARIGNNVIIANKDNVQEADRASEGFYIRSGIIVVLKDSEITNGTII 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02392 552 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 216 224 IPR005836 GO:0005978|GO:0008878
Spst1g02392 552 CDD ADP_Glucose_PP 123 383 - -
Spst1g02392 552 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 331 341 IPR005836 GO:0005978|GO:0008878
Spst1g02392 552 SUPERFAMILY Nucleotide-diphospho-sugar transferases 120 513 IPR029044 -
Spst1g02392 552 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 99 552 IPR011831 GO:0005978|GO:0008878
Spst1g02392 552 FunFam Glucose-1-phosphate adenylyltransferase 418 552 - -
Spst1g02392 552 NCBIfam glucose-1-phosphate adenylyltransferase 121 516 IPR011831 GO:0005978|GO:0008878
Spst1g02392 552 SUPERFAMILY Trimeric LpxA-like enzymes 416 552 IPR011004 -
Spst1g02392 552 CDD LbH_G1P_AT_C 420 546 - -
Spst1g02392 552 Pfam Nucleotidyl transferase 122 397 IPR005835 GO:0009058
Spst1g02392 552 FunFam Glucose-1-phosphate adenylyltransferase 103 417 - -
Spst1g02392 552 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 108 417 IPR029044 -
Spst1g02392 552 Gene3D Hexapeptide repeat proteins 418 552 - -
Spst1g02392 552 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 126 145 IPR005836 GO:0005978|GO:0008878
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02392 Spst-Chr1 32505200 32511329 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02392 K00975 - gmx:100786313 1003.43