Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02390 ATGGCTTCAACTCTGCTCCCCCTGGCAACCTTCTTCTTACTCCTCTCCGCTTCTTATCTCCGGATTGCTGGGGCAGAAGCAGAACCGTTGACCAGTCTCAAGCTTAATTCTCCAATTCTTCAGGAGTCTATTGCTAAACAGATTAACGAAAATCCTGAAGCAGGATGGGAGGCTGCTATAAATCCTCGTTTCTCCAATTATACAGTTGGACAATTTAAGCGCCTTCTTGGAGTCAAACAAATGCCCAAGAGCGAACTGAGAAGTATACCCGTCATTTCTCATCCAAAATCATTGAAGTTGCCGAAGAATTTTGATGCAAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGGTCACCACCTACTTGCTCGTAATCCTCCTATTTTCACAGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTCGAATCATTGTCAGATCGCTTTTGCATTCATTTTGATGTTAATGTTTCTCTATCTGTTAATGACCTTCTTGCATGCTGTGGCTTTCTGTGTGGATCTGGATGTGATGGAGGATATCCCTTATATGCATGGCGATATTTAGCCCACCACGGTGTTGTCACTGAAGAGTGTGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGCGAGCCAGCTTATCAGACTCCCAAGTGTGTTAAAAAATGTGTAGATGGGAACCAGTTTTGGAAGAAGTCAAAGCACTTTAGTGTCAATGCCTACAATGTCAAGTCTAATCCCTATGATATCATGGCAGAAGTGTACAAAAATGGGCCAGTAGAGGTTGCATTCACTGTTTATGAGGATTTTGCTCACTACAAATCAGGAGTTTACAAACACGTCACAGGTTATGCACTGGGCGGTCATGCAGTAAAGCTAATTGGGTGGGGAACAACTGACGATGGGGATGACTATTGGCTTCTCGCAAATCAGTGGAACAGAGAATGGGGAGATGATGGTTACTTCAAGATCCAAAGGGGGACAAACGAATGTGGGATTGAAGAGGAGGTAACTGCTGGTTTGCCTTCTACCAAAAACCTCGTAAGAGAGGTGACTGATATGGATGCTGACGCTGCTATGTTGCTTTCTCAAATAAAGAATGAAAGTGATGGAACATTGCTCCTAAAAGAGGGCGTAGAGGAAAACGCTAGTACGGTGGATGGACAAAGCGCATCTTGCACCCAAGCGAAGACAGAGAAGAGAATATTCAGAGCATAA 1233 0.4412 MASTLLPLATFFLLLSASYLRIAGAEAEPLTSLKLNSPILQESIAKQINENPEAGWEAAINPRFSNYTVGQFKRLLGVKQMPKSELRSIPVISHPKSLKLPKNFDARTAWSQCSTIGRILGHHLLARNPPIFTGHCGSCWAFGAVESLSDRFCIHFDVNVSLSVNDLLACCGFLCGSGCDGGYPLYAWRYLAHHGVVTEECDPYFDQIGCSHPGCEPAYQTPKCVKKCVDGNQFWKKSKHFSVNAYNVKSNPYDIMAEVYKNGPVEVAFTVYEDFAHYKSGVYKHVTGYALGGHAVKLIGWGTTDDGDDYWLLANQWNREWGDDGYFKIQRGTNECGIEEEVTAGLPSTKNLVREVTDMDADAAMLLSQIKNESDGTLLLKEGVEENASTVDGQSASCTQAKTEKRIFRA 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02390 410 SMART pept_c1 100 346 IPR000668 GO:0006508|GO:0008234
Spst1g02390 410 Pfam Papain family cysteine protease 134 345 IPR000668 GO:0006508|GO:0008234
Spst1g02390 410 Pfam Peptidase family C1 propeptide 40 80 IPR012599 GO:0004197|GO:0050790
Spst1g02390 410 PRINTS Papain cysteine protease (C1) family signature 294 304 IPR000668 GO:0006508|GO:0008234
Spst1g02390 410 PRINTS Papain cysteine protease (C1) family signature 310 316 IPR000668 GO:0006508|GO:0008234
Spst1g02390 410 PRINTS Papain cysteine protease (C1) family signature 133 148 IPR000668 GO:0006508|GO:0008234
Spst1g02390 410 CDD Peptidase_C1A_CathepsinB 101 345 - -
Spst1g02390 410 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 292 302 IPR025660 -
Spst1g02390 410 FunFam cathepsin B-like protease 2 33 352 - -
Spst1g02390 410 Gene3D Cysteine proteinases 32 353 - -
Spst1g02390 410 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 50 339 IPR013128 GO:0008234
Spst1g02390 410 SUPERFAMILY Cysteine proteinases 45 347 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02390 Spst-Chr1 32483996 32492167 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02390 K01363 - gmx:100788988 667.537