Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02370 ATGGGGCAAAAGCATTTGGTGGTGACCTTCTGTTTATGGGCTTTAACATGTTCCCTTCTTCCATCTCTCTCCTTCGGAATTCTGAGAATTGGTTTGAAGAAGAGACCTCTAGATCTTAATAGTATTAATGCTGCTAGAAAGGCAAGAGAAGGTCTAAGATCTGGAAGACCAATTATGGGTGAGCATAATCAGTATATTGTTAAGTCAAAAGGTGAAGATATAGTACCTTTGAAAAATTATTTGGATGCTCAGTATTTTGGTGAGATTGGAATTGGCACACCCCCTCAGACCTTTACTGTTGTGTTTGATACTGGTAGTTCCAACATTTGGGTTCCATCATCAAACTGCTACTTTTCTCTTGCTTGCTATACCCATCATTGGTACAAGGCAAAGAGATCCAAAACATATGCCAAAAATGGAACATCATGTAAAATAAACTATGGATCTGGATCGATATCTGGTTACTTCAGTCAAGATAGTGTTAAAGTTGGCAACGCTGTTGTCAAGCAGCAGGATTTCATTGAAGCTACCCGAGAGGGAAGTCTTTCCTTTCTGGCAGCAAAGTTCGATGGAATACTGGGACTTGGATTTCAGGAGATCTCAGTTGCAAATGCTGTGCCACTATGGTACAAAATGGTGGAGCAAAATCTTGTCACTGAGAAGGTGTTCTCATTTTGGTTGAATGGGGATCCAAATGCTAAAAAGGGCGGTGAAATAGTTTTTGGTGGTGTTAACCCAAAGCACTTCAAAGGAGAGCACACTTATTTTCCAGTTACTGAAAAAGGTTACTGGCAGATTGAAATTGGAGGTTTTTACATTGGAGGTGCTTCAACAGGTGTTTGTGAGGGTGGCTGTGCGGCTATTGTGGATTCAGGAACATCTTTGCTTGCTGGCCCAACTCATGTTGTGGCTGAAATCAACCATGCTATTGGAGCTGAAGGAGTTCTTAGTGTAGAATGTAAGGATGTCGTTTCTCAATATGGAGAGTTGATTTGGGATCTCTTGGTATCAGGGGTGAAACCTGATGACATATGTTCACAAGTTGGTTTATGTTCTTCCAAAAGGATTCAATCTAAGAGATCAGAAAGCCCTGGGATTGAAATGGTGACTGAAAAGGAACAGAGTGAGTTGACGGCAAGGGATACTCCTTTGTGTTCTTCTTGTCAGATGCTTGTTCTTTGGATCCAGAATCAACTAAAACAAAAACAAACAAAGGACAGAGTATTCAACTATGTGAATCAACTGTGTGAGAGCCTGCCAAGTCCATCTGGAGAGTCAGTGATAAGCTGTAACAGTCTTTCCAAGATGCCAAACATTACATTCACAATTGGAGATAAACCTTTTGTCCTTACACCAGAGCAGTATATTTTGAGAACTGGAGAGGGCATTACAGAAGTCTGCCTTAGTGGGTTTATTGCTTTTGATGTTCCTCCTCCACGGGGTCCATTGTGGATTCTTGGGGATGTTTTCATGAGGGCATATCACACTATATTTGACTACGGAAATCTCCAAGTTGGGTTTGCTGAAGCTGCCTAA 1536 0.4128 MGQKHLVVTFCLWALTCSLLPSLSFGILRIGLKKRPLDLNSINAARKAREGLRSGRPIMGEHNQYIVKSKGEDIVPLKNYLDAQYFGEIGIGTPPQTFTVVFDTGSSNIWVPSSNCYFSLACYTHHWYKAKRSKTYAKNGTSCKINYGSGSISGYFSQDSVKVGNAVVKQQDFIEATREGSLSFLAAKFDGILGLGFQEISVANAVPLWYKMVEQNLVTEKVFSFWLNGDPNAKKGGEIVFGGVNPKHFKGEHTYFPVTEKGYWQIEIGGFYIGGASTGVCEGGCAAIVDSGTSLLAGPTHVVAEINHAIGAEGVLSVECKDVVSQYGELIWDLLVSGVKPDDICSQVGLCSSKRIQSKRSESPGIEMVTEKEQSELTARDTPLCSSCQMLVLWIQNQLKQKQTKDRVFNYVNQLCESLPSPSGESVISCNSLSKMPNITFTIGDKPFVLTPEQYILRTGEGITEVCLSGFIAFDVPPPRGPLWILGDVFMRAYHTIFDYGNLQVGFAEAA 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02370 511 SMART sapb_4 279 351 IPR008139 -
Spst1g02370 511 FunFam Aspartic proteinase A1 28 243 - -
Spst1g02370 511 Pfam Saposin-like type B, region 1 383 420 IPR007856 GO:0006629
Spst1g02370 511 CDD phytepsin 75 509 IPR033869 GO:0004190
Spst1g02370 511 SUPERFAMILY Saposin 316 420 IPR011001 -
Spst1g02370 511 Gene3D Acid Proteases 28 243 IPR021109 -
Spst1g02370 511 FunFam Lysosomal aspartic protease 378 510 - -
Spst1g02370 511 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 18 509 IPR001461 GO:0004190|GO:0006508
Spst1g02370 511 Gene3D - 315 420 - -
Spst1g02370 511 Pfam Saposin-like type B, region 2 319 351 IPR008138 -
Spst1g02370 511 Gene3D Acid Proteases 245 511 IPR021109 -
Spst1g02370 511 ProSiteProfiles Saposin B type domain profile. 381 422 IPR008139 -
Spst1g02370 511 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Spst1g02370 511 PRINTS Pepsin (A1) aspartic protease family signature 287 298 IPR001461 GO:0004190|GO:0006508
Spst1g02370 511 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Spst1g02370 511 PRINTS Pepsin (A1) aspartic protease family signature 237 250 IPR001461 GO:0004190|GO:0006508
Spst1g02370 511 PRINTS Pepsin (A1) aspartic protease family signature 484 499 IPR001461 GO:0004190|GO:0006508
Spst1g02370 511 SUPERFAMILY Acid proteases 16 510 IPR021109 -
Spst1g02370 511 FunFam Aspartic proteinase A1 315 420 - -
Spst1g02370 511 Pfam Eukaryotic aspartyl protease 84 510 IPR033121 -
Spst1g02370 511 ProSiteProfiles Peptidase family A1 domain profile. 85 508 IPR033121 -
Spst1g02370 511 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 287 298 IPR001969 GO:0004190|GO:0006508
Spst1g02370 511 ProSiteProfiles Saposin B type domain profile. 315 355 IPR008139 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02370 Spst-Chr1 32278424 32281599 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02370 K08245 - gmx:548009 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02370 1 32278424 32281599 Spst1g02370 1 32278424 32281599 ECH