Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02346 ATGGCACCTAACATCACCACCGTCACTGTGAATGGCACCACTGAGCAGCCCAAAGGTCGCAGTGGACTTGCCTTTGTGACCTTCCTTGCAGGGAACGGTGATTACATTAAGGGTGTTGTGGGTTTGGCCAAAGGTTTGAGAAAGGTCAAAAGCATGTACCCTTTGGTGGTTGCTGTGTTGGCCGATGTTCCCCAAGAACACCGTGACATTCTGAAATCGCAAGGTTGCACTGTCAGGGAGATTGAACCTGTGTACCCGCCCGAGAATCAGACAGAGTTCGCCATGGCTTATTATGTCATCAATTACTCCAAATTACGTATTTGGGAGTTTGTGGAGTACACCAAGATGATATATCTGGATGGTGACATCCAGGTTTTTGGAAACATTGATCACTTGTTTGATCTTCCTGATAACTATTTCTATGCTGTCATGGATTGTTTCTGCGAGAAGACTTGGAGCCACAGCCCTCAGTACCAGATTGGTTACTGCCAACAGTGCCCTAATAAGGTTGAATGGCCCTCTCACTTGGGTTCCAAACCTCCTCTATATTTCAACGCTGGCATGTTCGTGTATGAGCCTAATCTTGACACTTACCGTGATCTTCTTCAAACAGTTCAAATCACCAAGCCCACTTCTTTTGCTGAGCAGGACTTTCTGAACATGTACTTCAAGGACAAGTACAAACCTATACCAAACTTGTACAATCTTGTACTGGCCATGCTGTGGCGTCACCCCGAGAATGTTGAACTTCACAAAGTTCAAGTGGTTCATTACTGTGCTGATGGGTCTAAGCCTTGGAGATTCACTGGGAAGGAGAAGAACATGGAGAGAGAAGATATCAAGATGCTTGTGAAGAAGTGGTGGGAGATATATGAAGATGAGACTCTTGACTATGATCACAACAACCCTGTGAAACGTTTCACTTCAGCACTATTGGAGGCTGGTGGAGCTCCACTTGTGTCAGCATCTACTGCTGCATAA 981 0.4567 MAPNITTVTVNGTTEQPKGRSGLAFVTFLAGNGDYIKGVVGLAKGLRKVKSMYPLVVAVLADVPQEHRDILKSQGCTVREIEPVYPPENQTEFAMAYYVINYSKLRIWEFVEYTKMIYLDGDIQVFGNIDHLFDLPDNYFYAVMDCFCEKTWSHSPQYQIGYCQQCPNKVEWPSHLGSKPPLYFNAGMFVYEPNLDTYRDLLQTVQITKPTSFAEQDFLNMYFKDKYKPIPNLYNLVLAMLWRHPENVELHKVQVVHYCADGSKPWRFTGKEKNMEREDIKMLVKKWWEIYEDETLDYDHNNPVKRFTSALLEAGGAPLVSASTAA 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02346 326 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 23 299 IPR029044 -
Spst1g02346 326 CDD GT8_Glycogenin 24 293 - -
Spst1g02346 326 PANTHER GLYCOGENIN SUBFAMILY MEMBER 20 293 - -
Spst1g02346 326 FunFam Hexosyltransferase 21 299 - -
Spst1g02346 326 Pfam Glycosyl transferase family 8 27 268 IPR002495 GO:0016757
Spst1g02346 326 SUPERFAMILY Nucleotide-diphospho-sugar transferases 26 295 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02346 Spst-Chr1 32068786 32071160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02346 1 326 Glycosyltransferase AT1G56600 72.566 0.0 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02346 K18819 - gmx:100800249 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02346 1 32068786 32071160 Spst1g02346 1 32068786 32071160 ECH
Spst1g02346 1 32068786 32071160 Spst10g01784 10 18227199 18228508 PCT