Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02343 ATGTATGGATTAAGTGAACTTCCCTATTCTTCAAGGAAAAGTCTAGACTATACGAATACTTTGTCTGAAAGAGAAAGTTTAGCCCTCGCCGGTCCTGCAATCAGCTACATGACTCAGCGGGTATACTTTGATTTTGAGCGAGAAAGAGAAATGTTGCAGTGCATATTTCTTCTGTCCGATTCCGGAGAGGTGATGCTAGAGAAACAGCTTACTGGGCACCGCGTAGATCGCTCAATATGTGCCTGGTTCTGGGACCAAGCCATTTCTCAACCTGATTCCTTCAAGCAACAACCAGTTATTGCTTCCCCCACGCATTATCTATTCCAAATTTTTCGTGAGGGAATAACTTTTTTGGCTTGCACTCAAGTCGAAATGCCACCATTGATGGCCATTGAATTCCTTTGTAGGGTAGCTGACGTTCTCAATGAATATCTTGGGGGATTGAATGAAGACTTGATCAAAGACAACTTTGTCATTGTGTATGAGCTTCTGGATGAGATGATAGACAATGGCTTCCCGCTAACTACGGAACCTAACATCCTGCGAGAGATGATAGCTCCACCAAATATCGTTAGCAAAGTCTTGAGTGTTGTGACTGGCAGCAGCTCCAATGTGAGTGACACCCTCCCAGGTGCTACTGCATCTCTTGTTCCCTGGAGAACAGCAGACACAAAGTATGCCAACAATGAAATTTATGTAGATCTTGTTGAAGAAATGGATGCAACGATAAACAGGGACGGAGTTCTAGTGAAATGTGAGATCAATGGTGAGGTTCAAGTGAATTCCCATATAACAGGGCTTCCTGATTTGACTCTTTCATTTTCAAATCCTTCAATCCTTGATGATGTGAGGTTCCATCCCTGTGTTAGATATCGGCCCTGGGAATCCCATCAATTTCTTTCATTCGTGCCCCCTGATGGGCAATTTAAGCTCATGAGTTACAGAGTCAGAAAATTGAAGAACACCCCGATATATGTAAAGCCACAGTTGACTTCAGATGGTGGAACATGCCGTGTTAGTGTATTGGTTGGAATAAGAAATGATCCTGGAAAGACAATTGATTCCGTTACTGTTCAGTTTCAGCTTCCTTCTTGCGTCTTATCAGCTGATCTGACTTCAAATTATGGAATAGTAAATATACTGTCTAACAAGACATGCTTTTGGTCCATTGGTCGGATCCCAAAGGATAAAGCCCCTTCAATGTCAGGAACATTGGTGCTGGAGACTGGATTGGAGCGCCTTCATGTCTTTCCCACATTTCAAGTGGGTTTTAGGATTATGGGTGTTGCCCTCTCGGGTCTGCAAATAGATAAACTAGATCTTAAGACTGTACCGTACCGTTTTTATAAAGGTTTTCGAGCTCTTACTCGGGCAGGGGAATTTGAAGTGAGGTCCTAA 1398 0.4306 MYGLSELPYSSRKSLDYTNTLSERESLALAGPAISYMTQRVYFDFEREREMLQCIFLLSDSGEVMLEKQLTGHRVDRSICAWFWDQAISQPDSFKQQPVIASPTHYLFQIFREGITFLACTQVEMPPLMAIEFLCRVADVLNEYLGGLNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKVLSVVTGSSSNVSDTLPGATASLVPWRTADTKYANNEIYVDLVEEMDATINRDGVLVKCEINGEVQVNSHITGLPDLTLSFSNPSILDDVRFHPCVRYRPWESHQFLSFVPPDGQFKLMSYRVRKLKNTPIYVKPQLTSDGGTCRVSVLVGIRNDPGKTIDSVTVQFQLPSCVLSADLTSNYGIVNILSNKTCFWSIGRIPKDKAPSMSGTLVLETGLERLHVFPTFQVGFRIMGVALSGLQIDKLDLKTVPYRFYKGFRALTRAGEFEVRS 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02343 465 SUPERFAMILY SNARE-like 51 192 IPR011012 -
Spst1g02343 465 Pfam Adaptor complexes medium subunit family 217 464 IPR028565 -
Spst1g02343 465 FunFam AP-2 complex subunit mu, putative 51 192 - -
Spst1g02343 465 CDD AP3_Mu_N 53 192 - -
Spst1g02343 465 Gene3D Mu homology domain, subdomain B 322 463 - -
Spst1g02343 465 ProSiteProfiles Mu homology domain (MHD) profile. 228 464 IPR028565 -
Spst1g02343 465 CDD AP-3_Mu3_Cterm 217 464 - -
Spst1g02343 465 PRINTS Clathrin coat assembly protein signature 387 398 IPR001392 GO:0006886|GO:0016192|GO:0030131
Spst1g02343 465 PRINTS Clathrin coat assembly protein signature 150 177 IPR001392 GO:0006886|GO:0016192|GO:0030131
Spst1g02343 465 PRINTS Clathrin coat assembly protein signature 280 307 IPR001392 GO:0006886|GO:0016192|GO:0030131
Spst1g02343 465 PANTHER AP COMPLEX SUBUNIT MU 51 464 - -
Spst1g02343 465 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 217 464 IPR036168 -
Spst1g02343 465 Gene3D - 51 192 - -
Spst1g02343 465 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 217 237 IPR018240 GO:0006886|GO:0016192|GO:0030131
Spst1g02343 465 Gene3D Mu homology domain, subdomain B 217 460 - -
Spst1g02343 465 PIRSF AP_complex_mu 51 465 IPR001392 GO:0006886|GO:0016192|GO:0030131
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02343 Spst-Chr1 32052463 32057654 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02343 K12398 - gmx:100791605 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02343 1 32052463 32057654 Spst1g02343 1 32052463 32057654 ECH
Spst1g02343 1 32052463 32057654 Spst10g01782 10 18217392 18219716 PCT