Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02340 ATGGCAGACTTGGAAAACATGCTTCTTGAGGCAGCTGGAAGGACTAGTTCGCCAGTGAGAAAGCGGCACAAGCCTCGGAACTCGAAATCCAAACGTGAGGGTGGTGCGGCATTCTCTGATGGTGGAAGTAATTCTAGAGAGGAAGACTCTGATGAGGGTGCAAACAAGAAATCACAGAGATATGCATCCCATGTTCCACTGAAGAAGAGATTGGACATGAGCAGAAGAAATAGTAATAATAGTATTCGCAATGAGCATGGTGGGGGTGACTTGGAGGATGGAGTTCCTGATAGGGATGGTGGCAGCAGTGAAGAATCTGATGTTGGCAGTGATCTTTACAAGAACGAAGACGACAAACAGAAGCTCGCAAATATGACAGAACTTGAAAGGGAGATGATTTTGTCTGATAGAGCAACCAAAAAATGTGACAAGGAATTCAAAGAGAAAATGAGAATGAAGAGGGAAAACAAAAATGCAAGTGCAAAGATTAGTTCTGCTGCAAATTCATCTCATCATCCATCATCTGCCAAGGTTCGTTCCTCGGCTAGACATGCTGAGAGGACGGCTTCCAAAGGAGATGTTCTAAGTGAATTGCGCGCGAAAAGGATGAAGCAACAAATCTTAGATCCTCATGATAAATTGGGAAAGGCTTCAGGATCAGGCTCAAGTAGCAAGCAGACACCTGGGGTCGCGGCAAGTCCTAGTAGCTCTAGTCAGAGTGAGAGTGTTATTCGGTCTGACAGTGAAAGAGAGTCATCTGATGATGGTGGATTGGGTGACAGTGATGATGACAAGAACATTCTTGAATCAAAGATGCCAACGTTTGAGAACATTAGGGAAATCACAATTAGGAGATCAAAGCTTGTGAAGTGGTTGAATGAACCATTTTTTGAGGAGTTAATTGTTGGTTGTTTTGTGAGAATTGGCATAGGAAAGTCAGAAAGTGGACCTGTTTATAGGCTCTGCATAGTGCAGAGAGTTGATGGGGCTGACCCAAATAAGCATTACAAGGTAGAGAATAGAGTCACTCACAAATATCTAGTTTGTGTGTGGGGCAGTGAGAACTCGGCTAAAAAGTTTCAGGTGGCTGTAGTTTCAGATTCTGCACCATTGGAGAAAGAGTTCAGACAGTGGGTTAGAGAAGTTGAGAGAACTTGCAGCCAAATGCCGAGTAAGATGAGTGTCTTGGAGAAGAAGGAGGCCATAAGAAGAACAAGCGCGTATGTTTATTCAGCTGCCACTGTGAAGCAGATGCTAGAAGAAAAAAAATCAGCCCCATCTAGGCCACTGAACATCGCAGTGGAGAAGGATCGTTTGAAGAATCTGTTGGAGGTTGCAAAATGTAAGAATGATGAAGCAGAGATGGATAGGATCTTGAGAAAGCTCGCGGATTTGGAAGCATCTCGTAAATCCCGAGAGAATGATGCAAAGGCTTTGAGGCTGGCTGAGATGAACAGGAAGAACAAGGTTGAGAACTTCAAGAACTTATCTGAACATAAACAGTTGAATGCAAATTTGAAAGCGGGTGAGGAAGGCTATGATCCCTTTTCGAGGAGATGGACAAGGTCGAGGAATTACTACGGGAAAGATACCGAGAAGAATGAAGATAAAGGAGAAAATGATGGTGAAGTTAGTAAGGGGGAAGAGAAAGAAGAAGAAGAAGCTGTTACAACAAAGGCTGGTGTTGAAGTCACAGAATTGGCATTGCAAGCAGCTGCTGATGAAGGGAAGTTGATTGATACTAATGCTCCTGTGGATGGTGGAACAGAATCAAATATGATGCACGATTTCGACTTGCCTATCTCTTTGGCTGAACTCAAGAATTTTGGTGGACCACAGGGACTCAAAAATGGGTTTCTAGCAAGGAAACAAAAAATAGAAGCAACAGTCGGGTGCAGGGTTTCTGAGAATGATGGGAGTCGGCATGCACTTACATTAACTATCAGTGACTACAAGAGAAGAAGAGGACTTCTGTGA 1977 0.436 MADLENMLLEAAGRTSSPVRKRHKPRNSKSKREGGAAFSDGGSNSREEDSDEGANKKSQRYASHVPLKKRLDMSRRNSNNSIRNEHGGGDLEDGVPDRDGGSSEESDVGSDLYKNEDDKQKLANMTELEREMILSDRATKKCDKEFKEKMRMKRENKNASAKISSAANSSHHPSSAKVRSSARHAERTASKGDVLSELRAKRMKQQILDPHDKLGKASGSGSSSKQTPGVAASPSSSSQSESVIRSDSERESSDDGGLGDSDDDKNILESKMPTFENIREITIRRSKLVKWLNEPFFEELIVGCFVRIGIGKSESGPVYRLCIVQRVDGADPNKHYKVENRVTHKYLVCVWGSENSAKKFQVAVVSDSAPLEKEFRQWVREVERTCSQMPSKMSVLEKKEAIRRTSAYVYSAATVKQMLEEKKSAPSRPLNIAVEKDRLKNLLEVAKCKNDEAEMDRILRKLADLEASRKSRENDAKALRLAEMNRKNKVENFKNLSEHKQLNANLKAGEEGYDPFSRRWTRSRNYYGKDTEKNEDKGENDGEVSKGEEKEEEEAVTTKAGVEVTELALQAAADEGKLIDTNAPVDGGTESNMMHDFDLPISLAELKNFGGPQGLKNGFLARKQKIEATVGCRVSENDGSRHALTLTISDYKRRRGLL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02340 658 MobiDBLite consensus disorder prediction 159 176 - -
Spst1g02340 658 MobiDBLite consensus disorder prediction 527 560 - -
Spst1g02340 658 SUPERFAMILY Plus3-like 274 403 IPR036128 GO:0003677
Spst1g02340 658 FunFam RNA polymerase-associated protein RTF1 273 405 - -
Spst1g02340 658 PANTHER UNCHARACTERIZED 235 657 - -
Spst1g02340 658 MobiDBLite consensus disorder prediction 244 269 - -
Spst1g02340 658 MobiDBLite consensus disorder prediction 217 243 - -
Spst1g02340 658 Pfam Plus-3 domain 277 382 IPR004343 GO:0003677
Spst1g02340 658 MobiDBLite consensus disorder prediction 179 211 - -
Spst1g02340 658 Coils Coil 436 482 - -
Spst1g02340 658 ProSiteProfiles Plus3 domain profile. 272 407 IPR004343 GO:0003677
Spst1g02340 658 MobiDBLite consensus disorder prediction 86 158 - -
Spst1g02340 658 SMART rtf1 272 384 IPR004343 GO:0003677
Spst1g02340 658 Gene3D - 272 405 IPR036128 GO:0003677
Spst1g02340 658 MobiDBLite consensus disorder prediction 1 269 - -
Spst1g02340 658 MobiDBLite consensus disorder prediction 44 58 - -
Spst1g02340 658 MobiDBLite consensus disorder prediction 527 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02340 Spst-Chr1 32035796 32037772 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02340 K15178 - gmx:100793188 991.104