Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02334 ATGGCAACGACATTTGAAACGGGTGGTTTTCAACTATCGCGCCCAACTGCCTCAACGAACTTTTTATTCTCCGCCACTCTCAAACGATCGAAACCTGTTTCACTCCCTTCTTCTCGATTGTTCCATTGCCGATCGAAACGCCTCGTTTTGACGCTGAGAACCGCGGTGAAAGCCTGCGCCGTGAATGTTGAGGAGAAGAATGTCGCCGTGGAATCTGGAGAGTGGGGGAAGGTTTCAGCGGTGCTCTTCGACATGGATGGCGTGCTCTGCAACAGCGAAGAGCCTTCTAGAAAAGCCGGCGTCGATTTGTTCGCCGAGATGGGCGTCGAAGTCACCGTCGATGATTTTGTGCCGTTTACAGGAACCGGCGAAGCAAACTTTTTGGGAGGTGTTGCTTCTGTTAAGGGAGTTAAAGGATTTGATCCAGAAGCGGCCAAAAAAAGGTTCTTTGAAATATATTTAGATAAGTTTGCAAAACCAGACTCTGGAATAGGATTTCCAGGTGCCCTTGAACTAATATCTCAGTGTAAAAGCAAAGGGCTTAAAGTGGCTGTAGCTTCAAGTGCTGATCGTGTAAAGGTTGATGCAAATCTAGCTGCTTCTGGTTTACCATTCTCAATGTTCGATGCGATTGTCTCTGCAGATGCTTTTGAGAATTTGAAACCTGCTCCTGATATTTTCTTAGCTGCATCGAGAATATTGAATGTGCCCCCTAGTGAGTGTATTGTAATAGAAGATGCGCTAGCTGGAGTGCAAGCTGCCAAATCTGCTCAAATGAGATGCATAGCTGTAAGGACCTCATTATCAGATGAGGTTTTGGAATCTGCTGAGCCAACATTTATCCGGGATGACATAGGAAGTGTCTCACTTGATGATATTCTCTATGGTGGCTCTGTTGGATATATGCGCAAGAGTGTAGATATTATATTGCACGAGGTCTTATCTAGACATGCCATTGCAGATGAGAGGATGCAGGGCTCTGAAACATTAAATAATTTTGCAGAGTCTTCATCAGCTGTGCTTGCTGGAGGGTTGCAGGGTTCTCGGCGCGATATACTGAGATTCGGAAGTCTGGGCGTTGCTATCTCTTGCCTGTTCTTCACCTTAAGTAACTGGAAGGCAATGCAATATGCTTCCCCAAAAGCAGTTTGGAATCAGTTGTTTGGTGTTACCAAGCCACCCTTGGAGGAGAAAGAAGTTAAGTCTCTGGTCAAGTGTGCTGATAACTCAAGATATGATAGGATCCAGCAATTTGTGAAGTACATATCTGATCTGGAAAGCAGGGGAAATGCTCAGATTGTTCCAGAATTTCCGTCTAAAGTTGATTGGCTGAATACAGCTCCACTTCAGTTTCGCAGGGATCTGAAAGGAAAAATTGTATTGCTGGATTTCTGGACTTATTGTTGTATAAACTGTATGCATGTTTTGCCAGACCTAGATGTTTTGGAGAAAAAATACAAAGATATGCCGTTTGTTGTTGTGGGTGTTCATTCTGCAAAGTTTGATAACGAGAAAGATTCTGAAGCCATTCGCAATGCAGTTCTACGCTATGGAATTTCTCACCCGGTTGTCAATGACGGAGACATGTTTCTTTGGCGGAACTTGGGTATAAATTCATGGCCAACATTTGCTGTAGTTGGCCCCAATGGTAAGCTTCTTGCACAACTAGCAGGAGAAGGTCACAAGAAGGATCTAGATGATTTTGTGGAGGCCGCACTTCTGTTTTATGGAAAACAGAACATGCTGGACAATACGCCAATTTCCTTGAGTTTGGAGAAAGATAATGATCCACGCCTGTTGACTTCTCCATTAAAGTTTCCAGGAAAGCTAGCAATTGATGTCCTTAATAACAGGCTTTTTATTTCCGACAGCAACCATAATCGCATAGTGGTTACTGACCTTGATGGGAATTTTATTGTACAAATTGGGAGCAGTGGGGAGGAAGGTTTGCAGGATGGTTCCTTTGATGATGCTACTTTTAACCGCCCTCAGGGCCTTGCTTATAATGCAAAGAAAAATATCCTTTATGTTGCAGACACTGAAAACCATGCTTTGAGGGAAATTGATTTTGTTGATGAGAAAGTGCGGACCCTTGCTGGAAATGGGACCAAGGGCTCTGACTATGTTGGAGGTGGAAAAGGAGACACACAGTTAGACTCCTCTATTTCTCTCTTTTTCCAGCTTCTCAATTCCCCTTGGGATGTCTGCTTTCATCCATTAGAAGAAAAAATTTATATTGCCATGGCTGGCCAACATCAGATTTGGGAGCATAATTTATCGGAAGCAACTACGAGAGCATTTAGTGGTGATGGCTATGAAAGAAATTTAAATGGATCAAGTCCTACAAACACGTCATTTGCACAACCTTCTGGTCTTTCATTGTCTCAAGATCGAAGAAAGATCTACATAGCTGATAGTGAGAGTAGTTCAATTCGAGCTGTGGATCTGAAAACAGGAGGATCTCAGTTGTTAGCTGGTGGTGACCCCATGTTCGCTGAGAATTTGTTTAAGTTTGGTGATCAAGATGGAATAGGCTCTGACGTACTTCTTCAACATCCATTGGGGGTTATGTGTGGAAATGATGGTGAAATTTATATCGCAGATAGCTATAATCACAAGATCAAGAAGCTAGATCCAACTAGTAAAAGAGTTAGCACCATTGCAGGAACTGGAAAAGCTGGTTTCAAAGATGGAACAGCTGTAAAAGCTCAGGTTGGTAAAATGTTCTATGCTATTTTCCTAAATCTTCTCGTACTCTCTGAACCGTCAGGAATTGTTGAAGGGAAGAAAGCTATTGAAAGAAAGCAAGTTTTAACCGTTCCAATTAAAGATGTTGAAATGCTCATCCTCACACATGAGATGCACCTTGAGAATTTCGCAATTTTGGTCATGGTTGTGGTGGTGATGGTACTCCAACATACAATGCCAAATATGCTTCAACTTTGGACATATTGCTACATGATTGCCATCGCTATGATCAGTCCTATTAGCCACAAGTCAATATGTCCAAGGATTCCAAG 3020 0.4278 MATTFETGGFQLSRPTASTNFLFSATLKRSKPVSLPSSRLFHCRSKRLVLTLRTAVKACAVNVEEKNVAVESGEWGKVSAVLFDMDGVLCNSEEPSRKAGVDLFAEMGVEVTVDDFVPFTGTGEANFLGGVASVKGVKGFDPEAAKKRFFEIYLDKFAKPDSGIGFPGALELISQCKSKGLKVAVASSADRVKVDANLAASGLPFSMFDAIVSADAFENLKPAPDIFLAASRILNVPPSECIVIEDALAGVQAAKSAQMRCIAVRTSLSDEVLESAEPTFIRDDIGSVSLDDILYGGSVGYMRKSVDIILHEVLSRHAIADERMQGSETLNNFAESSSAVLAGGLQGSRRDILRFGSLGVAISCLFFTLSNWKAMQYASPKAVWNQLFGVTKPPLEEKEVKSLVKCADNSRYDRIQQFVKYISDLESRGNAQIVPEFPSKVDWLNTAPLQFRRDLKGKIVLLDFWTYCCINCMHVLPDLDVLEKKYKDMPFVVVGVHSAKFDNEKDSEAIRNAVLRYGISHPVVNDGDMFLWRNLGINSWPTFAVVGPNGKLLAQLAGEGHKKDLDDFVEAALLFYGKQNMLDNTPISLSLEKDNDPRLLTSPLKFPGKLAIDVLNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLQDGSFDDATFNRPQGLAYNAKKNILYVADTENHALREIDFVDEKVRTLAGNGTKGSDYVGGGKGDTQLDSSISLFFQLLNSPWDVCFHPLEEKIYIAMAGQHQIWEHNLSEATTRAFSGDGYERNLNGSSPTNTSFAQPSGLSLSQDRRKIYIADSESSSIRAVDLKTGGSQLLAGGDPMFAENLFKFGDQDGIGSDVLLQHPLGVMCGNDGEIYIADSYNHKIKKLDPTSKRVSTIAGTGKAGFKDGTAVKAQVGKMFYAIFLNLLVLSEPSGIVEGKKAIERKQVLTVPIKDVEMLILTHEMHLENFAILVMVVVVMVLQHTMPNMLQLWTYCYMIAIAMISPISHKSICPRIP 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02334 1006 PANTHER NHL REPEAT-CONTAINING PROTEIN 2 104 930 - -
Spst1g02334 1006 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 77 286 - -
Spst1g02334 1006 MobiDBLite consensus disorder prediction 773 792 - -
Spst1g02334 1006 ProSiteProfiles Thioredoxin domain profile. 428 574 IPR013766 -
Spst1g02334 1006 NCBIfam HAD-IA family hydrolase 206 264 IPR006439 -
Spst1g02334 1006 FunFam NHL repeat-containing protein 2 412 576 - -
Spst1g02334 1006 Gene3D - 80 270 IPR023214 -
Spst1g02334 1006 Gene3D Glutaredoxin 402 575 - -
Spst1g02334 1006 SUPERFAMILY HAD-like 71 290 IPR036412 -
Spst1g02334 1006 CDD NHL-2_like 642 928 IPR045302 -
Spst1g02334 1006 SUPERFAMILY Thioredoxin-like 432 570 IPR036249 -
Spst1g02334 1006 SMART LY_2 597 639 IPR000033 -
Spst1g02334 1006 SMART LY_2 779 821 IPR000033 -
Spst1g02334 1006 Gene3D - 601 692 IPR011042 -
Spst1g02334 1006 Gene3D Putative phosphatase; domain 2 91 162 IPR023198 -
Spst1g02334 1006 CDD HAD_BPGM-like 80 266 - -
Spst1g02334 1006 Pfam Haloacid dehalogenase-like hydrolase 81 264 IPR041492 -
Spst1g02334 1006 Pfam NHL repeat 660 685 IPR001258 GO:0005515
Spst1g02334 1006 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 77 286 - -
Spst1g02334 1006 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 208 224 IPR006439 -
Spst1g02334 1006 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 176 189 IPR006439 -
Spst1g02334 1006 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 226 246 IPR006439 -
Spst1g02334 1006 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 78 89 IPR006439 -
Spst1g02334 1006 MobiDBLite consensus disorder prediction 770 792 - -
Spst1g02334 1006 FunFam NHL repeat-containing protein 2 589 755 - -
Spst1g02334 1006 Pfam Thioredoxin-like 457 551 IPR012336 -
Spst1g02334 1006 Gene3D - 727 831 IPR011042 -
Spst1g02334 1006 Gene3D - 832 913 IPR011042 -
Spst1g02334 1006 ProSiteProfiles NHL repeat profile. 850 880 IPR001258 GO:0005515
Spst1g02334 1006 SUPERFAMILY YWTD domain 598 887 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02334 - - gmx:100795843 1568.9