Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02326 ATGGCATGTTTACTACGAAAATCCCTCAGGACTAAGGCCCTGTTTCTGCACAAACTCGTTGGAAACTCGTCCGACTCGCATCAAACACTGGCTTCCTCAAGCTGGTTTTGGTGCCGCCAGTTGTCACTTTCACTTCCACACAAAACCACTACTTGCTTCGCTTCAAATTCGATCCCAAGTCCAAGCTTCTCTAACGCGCTTCTTCAAATTCGCTTTTGGGCCTCCGAGGCTGCCGCCACCGAACTCTCAACCTCTGATGGGCTCACGGTCCAACGTATTCTGGCCAATAATTGGACCATTCTCGACGAACACGACGGCGATTGGAGGAGTCATGCCACCGCTATAGCTCAATCTATTCATTTGATCAAACGCCGCTTACAGTGGGAAAAATTGAAGGTGAGGTTGGATATGTTATCATTCCAGCTGGGTAAGGAAGACCTTTGGGATGATCCTATGCTCGCAGGGAAATTAAGCCGAGAACATGGTTCGCTCCTGGGGAAGATGAAAGAGGTAAATGCATTGGAACAAGAGTTACTTGAGCATATTGACATGATAAAGCTTGCCCGCGAAGAGAATGATGCGGACTTGGAATCGGAATCATTGAAAGTGTTGCTTAACATGAGAAGAAATGCAAAAGAGAAAGAGCTAGAAGCGTTGCTTGCTGGGGAGCATGATTCTTGTTCTTGCTACATTGAGGTTCAAGCTGGGGCTGGGGGTACGGAGAGCATGGACTGGGCTGCAATGGTCATGCAGATGTATAAGTCATGGGCACAGCGGCGTGGATATAAAGTAACTGTAATGGATGAAATGCCTGGTGAGATTGCAGGAATAAAGCGAGCTACCATCAAAGTCGATGGTGAATTTGCATTTGGATATGCCAAAGCAGAAATAGGAGTGCACAGGCTGGTGCGCATATCACCTTTTGACAGCAATAAGCGCCGACATACTTCATTTGCTGCTGTGGCAGTGATTCCAATCCTAGGTGATGGATCTACCCATGTACAAATTAATGAATCTGATCTTCGAATTGAAAGATTTCGGGCTGGTGGTGCTGGTGGCCAACATGTTAACACAACTGAGAGTGCTGTAAGAATAGTTCATATTCCTACAGGAGTTACCGCAACTTGTCAGAACGAAAGATCGCAGCATCAGAATAAGGCTTCAGCTATGGCTGTGCTTCAGTCAAGATTAGACCAACTGGAGATGGCACGCCAGGCACAGTTGAATGCAAAACATACACAATCTCTCACTGACATAACATGGGGCAGTCAGATTCGTAGTTATGTTCTCCATCCATACCGTATGGTGAAAGATCTTAGAACTAACTACGAGGTTTCAGATCCCGACTCTGTCCTTGAGGGAGATCTAGACAGTTTCATCTTGAGCTATCTATCAGCTTCTTTGGATAAAGATGATGATGCTTAA 1425 0.4604 MACLLRKSLRTKALFLHKLVGNSSDSHQTLASSSWFWCRQLSLSLPHKTTTCFASNSIPSPSFSNALLQIRFWASEAAATELSTSDGLTVQRILANNWTILDEHDGDWRSHATAIAQSIHLIKRRLQWEKLKVRLDMLSFQLGKEDLWDDPMLAGKLSREHGSLLGKMKEVNALEQELLEHIDMIKLAREENDADLESESLKVLLNMRRNAKEKELEALLAGEHDSCSCYIEVQAGAGGTESMDWAAMVMQMYKSWAQRRGYKVTVMDEMPGEIAGIKRATIKVDGEFAFGYAKAEIGVHRLVRISPFDSNKRRHTSFAAVAVIPILGDGSTHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMARQAQLNAKHTQSLTDITWGSQIRSYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDSFILSYLSASLDKDDDA 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02326 474 Gene3D Release factor 108 217 - -
Spst1g02326 474 SUPERFAMILY Release factor 132 467 IPR045853 -
Spst1g02326 474 SMART PCRF_a_2 186 296 IPR005139 GO:0006415
Spst1g02326 474 FunFam Peptide chain release factor 1 330 423 - -
Spst1g02326 474 Pfam RF-1 domain 333 440 IPR000352 GO:0003747|GO:0006415
Spst1g02326 474 Pfam PCRF domain 133 321 IPR005139 GO:0006415
Spst1g02326 474 Coils Coil 171 191 - -
Spst1g02326 474 Coils Coil 390 410 - -
Spst1g02326 474 Gene3D - 231 460 - -
Spst1g02326 474 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 347 363 IPR000352 GO:0003747|GO:0006415
Spst1g02326 474 NCBIfam peptide chain release factor 2 114 464 IPR004374 GO:0005737|GO:0006415|GO:0016149
Spst1g02326 474 Hamap Peptide chain release factor 2 [prfB]. 104 468 IPR004374 GO:0005737|GO:0006415|GO:0016149
Spst1g02326 474 Gene3D - 327 423 - -
Spst1g02326 474 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 106 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02326 Spst-Chr1 31920735 31923460 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02326 K02836 - gmx:100797427 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02326 1 31920735 31923460 Spst1g02326 1 31920735 31923460 ECH