Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02324 ATGTTTTTGGTGGATTGGTTTTATGGGATTCTAGCGTCGCTTGGACTGTGGCAGAAGGAGGCCAAGATCTTATTCCTGGGCCTCGACAACGCTGGCAAAACCACCCTGCTTCACATGCTCAAAGATGAGAAATTAGTCCAGCATCAGCCTACCCAGTATCCTACATCAGAGGAGTTGAGTATTGGAAAGATCAAGTTCAAAGCTTTTGATCTAGGGGGTCATCAGATTGCTCGAAGAGTGTGGAAAGATTACTATGCCCAGGTAGATGCAGTGGTGTATTTGGTTGATGCGTATGACAAGGAAAGGTTTGCTGAGTCAAAAAAAGAGCTGGATGCTCTACTCTCTGATGAATCTTTAGCCAATGTCCCTTTCCTTGTCCTTGGAAATAAAATAGATATTTCATATGCTGCCTCAGAAGAAGAGCTGCGTTACCATTTGGGCCTGACTAACTTCACCACAGGCAAAGGTAAGGTAAATTTGACCGACTCAAATATCCGTCCAATGGAGGTGTTCATGTGCAGTATTGTGAAGAAAATGGGTTATGGAGAAGGTTTCAAATGGATTTCCCAGTACATCAAATAG 582 0.4347 MFLVDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDEKLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLVLGNKIDISYAASEEELRYHLGLTNFTTGKGKVNLTDSNIRPMEVFMCSIVKKMGYGEGFKWISQYIK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02324 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
Spst1g02324 193 FunFam GTP-binding protein SAR1A 1 193 - -
Spst1g02324 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Spst1g02324 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Spst1g02324 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Spst1g02324 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Spst1g02324 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Spst1g02324 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Spst1g02324 193 CDD Sar1 2 192 - -
Spst1g02324 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Spst1g02324 193 Gene3D - 1 193 IPR027417 -
Spst1g02324 193 SMART arf_sub_2 4 193 - -
Spst1g02324 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
Spst1g02324 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Spst1g02324 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
Spst1g02324 193 NCBIfam small GTP-binding protein domain 19 138 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02324 Spst-Chr1 31914258 31916552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02324 19 146 Miscellaneous Gene Families AT5G05670 28.873 8.14e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02324 K07953 - gmx:100305650 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02970 3 79385456 79387553 Spst1g02324 1 31914258 31916552 ECH
Spst1g02324 1 31914258 31916552 Spst1g02324 1 31914258 31916552 ECH