Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02271 ATGGCCATGCACTTTCTTCTGCTTCTTTTTGCAGTATATGTTGCTGCAATTGATGAAGAACCATTCCTAGGGGTGAATATTGGAAGAGATCTAACGGATATGCCTCACCCCACTCAAGTAGTAGCACTACTTAAAGCCCAGCAAATTCGACATGTTAGGTTGTATGATGCGGACCAAGCCATGCTCATTGCCCTTGCAAACACAGGAATTCAAGTTGCTGTGTCTGTCCCTAATGAAGAGATCCTTGCAATTGGTCAATCAAATACCACAGCTGCAAAGTGGGTTTCGCATAATGTGATAGCACATTACCCTGCCACTAACATAACATCTATTTGTGTTGGTTCTGAGGTTTTAACTGTCCTCCCTAATGTGGCAAAAGTGCTTGTCAGTGCCCTTAAGTTCATTCATTCAGCCCTTCTGGCATCCAATCTTGATCACCAAATTAAAGTTTCGACACCCCTTTCCTCTTCCATGATCCTTGACTCATTTCCACCTTCGCAAGCCTTCTTCAACCGCTCACTGAATCCAGTCTTGGTTCCAATGCTTCATTTCTTGCAAACCACTGGCTCTTATCTAATGCTCAACATCTACCCTTACTATGACTACATGCAGTCAAATGATGTGATCCCATTGGACTATGCACTCTTCAAACCCCTCCCTCCAAACAAAGAAGCTATTGATTCTAACACCCTTCTTCACTACTCCAACGTGTTTGATGCTGTGATTGATGCAGCATACTTTGCCATGGCTTTTCTCAATTACACTAACATTCCTGTGGTGGTGAGTGAAACAGGCTGGCCCTCAAAAGGTGACTCTAATGAACCAGATGCAACAGTAGAAAATGCCAACACTTACAACAGCAATTTGATCAAGCATGTGCTTAACGTAACTGGAACTCCCAAACACCCTGGAATTGGTGTTAGTACTTACATCTATGAGCTCTACAACGAGGATGCAAAGGCAGGGTCATTGTCTGAGAAGAACTGGGGTTTGTTTGATGCAAATGGGAAACCTATTTATGTTTTACAGTTGACAGAATCAGGAGGAGTGTTGGCAAATGACACCACTAATCAAACTTACTGCGTTGCAAAGGATGGTGCTGATCCTAAGATGTTGCAAGCTGGAATAGATTGGGCATGTGGACCTGGCAAGGTGGATTGCTCCCCTTTGCTGCAGGGAGAACCATGTTATGAACCAGACAATGTGGTTGCTCATGCAAATTATGTTTTTGACACTTATTATCATCAGATGGGAAAGTCTCCTCAGTCTTGTGATTTCAATGACATGGCTACAGTCTCCACCACCAATCCTAGTCATGGATCCTGTGTGTTCCCAGGAAGTCTTGGCAACAATGGCACCTTCCCTAACGTCACGTTATCATCAATGAATTCCACAAATTCAGATTCTTCTTCCTGCAATCTGCATCGTGGTGAAATGGGAATCAGAAGCCTTCTAATGATGATAGTACTTCTACTATGGGGATTGGTTTTGCCATAA 1497 0.4329 MAMHFLLLLFAVYVAAIDEEPFLGVNIGRDLTDMPHPTQVVALLKAQQIRHVRLYDADQAMLIALANTGIQVAVSVPNEEILAIGQSNTTAAKWVSHNVIAHYPATNITSICVGSEVLTVLPNVAKVLVSALKFIHSALLASNLDHQIKVSTPLSSSMILDSFPPSQAFFNRSLNPVLVPMLHFLQTTGSYLMLNIYPYYDYMQSNDVIPLDYALFKPLPPNKEAIDSNTLLHYSNVFDAVIDAAYFAMAFLNYTNIPVVVSETGWPSKGDSNEPDATVENANTYNSNLIKHVLNVTGTPKHPGIGVSTYIYELYNEDAKAGSLSEKNWGLFDANGKPIYVLQLTESGGVLANDTTNQTYCVAKDGADPKMLQAGIDWACGPGKVDCSPLLQGEPCYEPDNVVAHANYVFDTYYHQMGKSPQSCDFNDMATVSTTNPSHGSCVFPGSLGNNGTFPNVTLSSMNSTNSDSSSCNLHRGEMGIRSLLMMIVLLLWGLVLP 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02271 498 SMART X8_cls 359 444 IPR012946 -
Spst1g02271 498 FunFam Glucan endo-1,3-beta-glucosidase 3 22 347 - -
Spst1g02271 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 10 432 IPR044965 GO:0004553|GO:0005975
Spst1g02271 498 SUPERFAMILY (Trans)glycosidases 23 342 IPR017853 -
Spst1g02271 498 Gene3D Glycosidases 22 349 - -
Spst1g02271 498 Pfam Glycosyl hydrolases family 17 23 343 IPR000490 GO:0004553|GO:0005975
Spst1g02271 498 FunFam Glucan endo-1,3-beta-glucosidase 4 354 448 - -
Spst1g02271 498 ProSitePatterns Glycosyl hydrolases family 17 signature. 257 270 IPR000490 GO:0004553|GO:0005975
Spst1g02271 498 Pfam X8 domain 360 431 IPR012946 -
Spst1g02271 498 Gene3D - 353 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02271 Spst-Chr1 31406171 31409114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02271 18 490 Glycoside Hydrolase AT1G66250 71.789 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02271 K19891 - gmx:100811077 914.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02271 1 31406171 31409114 Spst1g02271 1 31406171 31409114 ECH
Spst8g00324 8 2917229 2919887 Spst1g02271 1 31406171 31409114 PCT